Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC018692.3-201ENST00000623929 123 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 U4.7-201ENST00000638126 106 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL6A1P12109 AC068647.1-201ENST00000489539 2265 ntBASIC3.68□□□□□ -1.82
COL6A1P12109 MIR335-201ENST00000362173 94 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.84-201ENST00000363011 104 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.105-201ENST00000363182 111 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-1062P-201ENST00000383908 107 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.405-201ENST00000383979 100 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.451-201ENST00000384200 100 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.458-201ENST00000384240 102 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.524-201ENST00000384564 100 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 Y_RNA.561-201ENST00000384694 100 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
COL6A1P12109 BTF3L4P2-201ENST00000392798 346 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RPS29P13-201ENST00000402041 169 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-121P-201ENST00000410525 99 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-1203P-201ENST00000410703 110 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AL590135.1-201ENST00000422215 156 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AC092047.1-201ENST00000424997 240 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 MTND5P15-201ENST00000434246 349 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AC006026.2-201ENST00000457376 180 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RN7SL93P-201ENST00000463035 293 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AC087190.1-201ENST00000484462 480 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AC107032.1-201ENST00000485945 480 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AC008885.1-201ENST00000514930 301 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-138P-201ENST00000515952 107 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNA5SP356-201ENST00000515972 94 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RN7SKP282-201ENST00000516824 299 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-182P-201ENST00000516970 105 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 RNU6-111P-201ENST00000517179 105 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.67□□□□□ -1.82
COL6A1P12109 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.67□□□□□ -1.82
COL6A1P12109 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
COL6A1P12109 AC092435.3-201ENST00000565538 3654 ntBASIC3.67□□□□□ -1.82
COL6A1P12109 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
COL6A1P12109 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A1P12109 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A1P12109 AL391987.6-201ENST00000305671 199 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 SNORD27-201ENST00000363981 72 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RNU6-270P-201ENST00000364131 105 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RNU6-336P-201ENST00000364891 107 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RNY3P4-201ENST00000384428 101 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RPL21P75-201ENST00000396599 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RPL21P28-201ENST00000401418 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A1P12109 AL590556.1-201ENST00000423231 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 SNRPEP9-201ENST00000436794 238 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 RPL23AP58-201ENST00000440453 469 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AL357552.1-201ENST00000445254 415 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RPL21P39-201ENST00000463605 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC132942.1-201ENST00000486753 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC093591.1-201ENST00000491435 481 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 RPL21P16-201ENST00000495531 483 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.66□□□□□ -1.82
COL6A1P12109 Y_RNA.700-201ENST00000516806 100 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 SNORA31.18-201ENST00000517043 134 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.66□□□□□ -1.82
COL6A1P12109 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 MIR4782-201ENST00000577987 79 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC004832.5-201ENST00000608677 401 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 MIR376A1-201ENST00000616574 68 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 AC090617.7-201ENST00000623952 126 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.66□□□□□ -1.82
COL6A1P12109 U6.99-201ENST00000637524 83 ntBASIC3.66□□□□□ -1.82
COL6A1P12109 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.66□□□□□ -1.82
COL6A1P12109 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL6A1P12109 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
COL6A1P12109 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.65□□□□□ -1.82
COL6A1P12109 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
COL6A1P12109 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A1P12109 RNU6-78P-201ENST00000362897 107 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 RNU6-283P-201ENST00000364788 107 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 SNORD21-201ENST00000383953 95 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 RNU6-217P-201ENST00000384164 104 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
COL6A1P12109 OOSP1P1-201ENST00000423265 274 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 MTND2P29-201ENST00000438595 412 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 snoU109.2-201ENST00000459316 135 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 ANXA2P1-201ENST00000505539 926 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 SNORA70.19-201ENST00000516717 90 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 RRN3P3-201ENST00000549207 578 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 Y_RNA.772-201ENST00000606692 102 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 AP001282.2-201ENST00000616149 309 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 U6.92-201ENST00000636464 89 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A1P12109 AC010680.1-201ENST00000590024 3590 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 FAM35CP-201ENST00000554755 2470 ntBASIC3.65□□□□□ -1.83
COL6A1P12109 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
COL6A1P12109 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
COL6A1P12109 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.64□□□□□ -1.83
COL6A1P12109 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.64□□□□□ -1.83
COL6A1P12109 SNORD81.1-201ENST00000363064 77 ntBASIC3.64□□□□□ -1.83
COL6A1P12109 Y_RNA.352-201ENST00000365439 102 ntBASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms