Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL359697.1-201ENST00000624879 587 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 MIR1291-201ENST00000627649 87 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 MIR1302-1-201ENST00000637932 143 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXD4P09016 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXD4P09016 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXD4P09016 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD4P09016 RNU6-428P-201ENST00000362942 107 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 RNU4-73P-201ENST00000363164 141 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 RNU5E-7P-201ENST00000365290 117 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 RNU6-827P-201ENST00000365553 106 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD4P09016 RNA5SP210-201ENST00000391034 120 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 FTH1P15-201ENST00000406984 280 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 RNU4-14P-201ENST00000410858 122 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 AL139396.1-201ENST00000421137 167 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXD4P09016 UBE2V1P4-201ENST00000425374 344 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXD4P09016 MTND3P23-201ENST00000431980 347 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 MICF-203ENST00000432679 129 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXD4P09016 snoU13.23-201ENST00000458863 104 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 RNU7-187P-201ENST00000458985 68 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXD4P09016 AC096745.1-201ENST00000509945 370 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.17□□□□□ -2.06
HOXD4P09016 AC021269.2-201ENST00000532318 330 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXD4P09016 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXD4P09016 POLR3GP2-201ENST00000588366 668 ntBASIC2.17□□□□□ -2.06
HOXD4P09016 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXD4P09016 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
HOXD4P09016 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.16□□□□□ -2.06
HOXD4P09016 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 Y_RNA.61-201ENST00000362835 102 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 SNORD114-30-201ENST00000364448 72 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 RNU6-1280P-201ENST00000365211 107 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 RN7SKP158-201ENST00000410453 326 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 HMGB3P2-201ENST00000411913 584 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 NCOR1P3-201ENST00000420479 303 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 SNAP23P1-201ENST00000433229 246 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 RPS3AP52-201ENST00000435639 297 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 AL161651.1-201ENST00000440882 223 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC107399.1-201ENST00000451226 265 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC116655.1-201ENST00000508324 901 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 HMGB3P3-201ENST00000510526 400 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 RPL39P5-202ENST00000512505 151 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.16□□□□□ -2.06
HOXD4P09016 SNORA43.2-201ENST00000516652 128 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 AC103996.1-201ENST00000555468 102 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 DEFB122-202ENST00000569013 197 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AL355375.2-201ENST00000574825 175 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 MIR1273D-201ENST00000577266 86 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.16□□□□□ -2.06
HOXD4P09016 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 MIR7157-201ENST00000635801 60 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 U4.7-201ENST00000638126 106 ntBASIC2.16□□□□□ -2.06
HOXD4P09016 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.16□□□□□ -2.06
HOXD4P09016 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
HOXD4P09016 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.15□□□□□ -2.06
HOXD4P09016 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
HOXD4P09016 AC092881.1-201ENST00000638218 2733 ntBASIC2.15□□□□□ -2.06
HOXD4P09016 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.07
HOXD4P09016 SNORA6-201ENST00000384033 151 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 Y_RNA.509-201ENST00000384506 99 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 MIR524-201ENST00000385242 87 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AC074085.1-201ENST00000413598 418 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 HMGN2P38-201ENST00000423806 265 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.15□□□□□ -2.07
HOXD4P09016 AC013470.1-201ENST00000453438 462 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXD4P09016 AC109479.2-201ENST00000517842 174 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.15□□□□□ -2.07
HOXD4P09016 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.15□□□□□ -2.07
HOXD4P09016 SNRPGP18-201ENST00000553000 214 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 TRAV32-201ENST00000553993 340 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 MIR4795-201ENST00000584182 89 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AC009314.1-201ENST00000603871 304 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AC016727.1-205ENST00000605437 569 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 AC103810.6-201ENST00000606708 136 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HOXD4P09016 AL359314.1-201ENST00000616913 261 ntBASIC2.15□□□□□ -2.07
HOXD4P09016 MTND5P30-201ENST00000452896 1731 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
HOXD4P09016 MTND4P27-201ENST00000450813 1354 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 MTND4P29-201ENST00000503122 1372 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.14□□□□□ -2.07
HOXD4P09016 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.14□□□□□ -2.07
HOXD4P09016 RNU6-858P-201ENST00000362436 107 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.58-201ENST00000362807 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.151-201ENST00000363566 112 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 Y_RNA.154-201ENST00000363624 102 ntBASIC2.14□□□□□ -2.07
HOXD4P09016 RNU6-336P-201ENST00000364891 107 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms