Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GNAI2P1-201ENST00000541815 315 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 SUB1P2-201ENST00000556401 297 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC145350.1-201ENST00000567426 208 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN9O95484 MIR3913-1-201ENST00000577744 102 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC008752.3-201ENST00000588113 712 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.6□□□□□ -2.15
CLDN9O95484 AC110760.3-201ENST00000598794 467 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC091805.2-201ENST00000603848 235 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC002044.1-201ENST00000606707 158 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 AC009161.2-201ENST00000624626 138 ntBASIC1.6□□□□□ -2.15
CLDN9O95484 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
CLDN9O95484 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
CLDN9O95484 Y_RNA.224-201ENST00000364308 111 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 SNORD32B-201ENST00000364460 84 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 Y_RNA.480-201ENST00000384364 102 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 RNU6-1127P-201ENST00000384580 107 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.59□□□□□ -2.15
CLDN9O95484 AL590135.1-201ENST00000422215 156 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC019205.3-201ENST00000424573 156 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC010975.2-201ENST00000427781 588 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC244670.1-201ENST00000436879 112 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC016700.2-201ENST00000446011 156 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.59□□□□□ -2.15
CLDN9O95484 SCARNA18-201ENST00000459004 134 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC079382.1-201ENST00000493346 557 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC015911.1-201ENST00000495111 156 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC022447.4-201ENST00000504053 364 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.59□□□□□ -2.15
CLDN9O95484 MIR3136-201ENST00000583498 78 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 RSL24D1P11-201ENST00000591045 491 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 MIR502-201ENST00000606349 86 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AL590240.4-201ENST00000616908 390 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 AC099842.1-201ENST00000619919 596 ntBASIC1.59□□□□□ -2.15
CLDN9O95484 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.59□□□□□ -2.15
CLDN9O95484 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.59□□□□□ -2.15
CLDN9O95484 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
CLDN9O95484 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.59□□□□□ -2.16
CLDN9O95484 AL390237.1-201ENST00000404226 1415 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 RNU6-266P-201ENST00000364225 107 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 RNU6-1141P-201ENST00000364520 107 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 MIR613-201ENST00000385248 95 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN9O95484 AL358934.1-201ENST00000432346 324 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC092473.1-201ENST00000441098 221 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN9O95484 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 C1DP4-201ENST00000455429 424 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN9O95484 TRMT112P2-201ENST00000512910 132 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.58□□□□□ -2.16
CLDN9O95484 SNORA31.16-201ENST00000516773 139 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.58□□□□□ -2.16
CLDN9O95484 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
CLDN9O95484 AC022880.1-201ENST00000534017 973 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.58□□□□□ -2.16
CLDN9O95484 MIR4255-201ENST00000579351 72 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC103810.8-201ENST00000607347 118 ntBASIC1.58□□□□□ -2.16
CLDN9O95484 AC245060.5-201ENST00000610778 3293 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.57□□□□□ -2.16
CLDN9O95484 RNA5SP493-201ENST00000364115 91 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 RNU6-142P-201ENST00000384019 107 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 RNU6-606P-201ENST00000384721 111 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 RN7SKP101-201ENST00000411376 320 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.57□□□□□ -2.16
CLDN9O95484 AC009310.1-201ENST00000414414 451 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 VN1R36P-201ENST00000414936 291 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AL117339.3-201ENST00000418733 162 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.57□□□□□ -2.16
CLDN9O95484 AL035666.1-201ENST00000446195 348 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 SNORD13-201ENST00000459299 104 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.57□□□□□ -2.16
CLDN9O95484 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.57□□□□□ -2.16
CLDN9O95484 AK3P2-201ENST00000507976 429 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 RNVU1-2-201ENST00000516326 135 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 SNORA25.17-201ENST00000517184 124 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 HSPE1P4-201ENST00000550617 308 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.57□□□□□ -2.16
CLDN9O95484 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.57□□□□□ -2.16
CLDN9O95484 AC040904.1-201ENST00000590850 223 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AC008536.2-201ENST00000607284 349 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AC068944.2-201ENST00000610373 403 ntBASIC1.57□□□□□ -2.16
CLDN9O95484 AP000560.1-201ENST00000624150 1937 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 CBX3P1-201ENST00000325243 554 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 RNU4-56P-201ENST00000364700 142 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 RNA5SP363-201ENST00000365072 115 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 RNU6-827P-201ENST00000365553 106 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 SNORA48.1-201ENST00000390879 135 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 RPS20P15-201ENST00000412792 311 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 HMGN2P18-201ENST00000450680 270 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AC013470.1-201ENST00000453438 462 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 GMFBP1-201ENST00000467831 427 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.56□□□□□ -2.16
CLDN9O95484 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC103996.1-201ENST00000555468 102 ntBASIC1.56□□□□□ -2.16
CLDN9O95484 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.56□□□□□ -2.16
CLDN9O95484 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms