Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC012005.1-201ENST00000624575 75 ntBASIC2.65□□□□□ -1.99
LDB3O75112 ADAM3A-203ENST00000461344 2157 ntBASIC2.65□□□□□ -1.99
LDB3O75112 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
LDB3O75112 AL161431.1-201ENST00000618966 4205 ntBASIC2.65□□□□□ -1.99
LDB3O75112 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LDB3O75112 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LDB3O75112 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.64□□□□□ -1.99
LDB3O75112 RNU6-874P-201ENST00000362390 105 ntBASIC2.64□□□□□ -1.99
LDB3O75112 RNY1P16-201ENST00000363063 111 ntBASIC2.64□□□□□ -1.99
LDB3O75112 Y_RNA.222-201ENST00000364264 102 ntBASIC2.64□□□□□ -1.99
LDB3O75112 RNU6-1280P-201ENST00000365211 107 ntBASIC2.64□□□□□ -1.99
LDB3O75112 RNU6-708P-201ENST00000384217 107 ntBASIC2.64□□□□□ -1.99
LDB3O75112 RNU6-472P-201ENST00000384299 107 ntBASIC2.64□□□□□ -1.99
LDB3O75112 MIR1302-3-201ENST00000408128 138 ntBASIC2.64□□□□□ -1.99
LDB3O75112 AC023141.4-201ENST00000412031 328 ntBASIC2.64□□□□□ -1.99
LDB3O75112 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.64□□□□□ -1.99
LDB3O75112 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.64□□□□□ -1.99
LDB3O75112 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.64□□□□□ -1.99
LDB3O75112 AL513043.1-201ENST00000439124 535 ntBASIC2.64□□□□□ -1.99
LDB3O75112 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.64□□□□□ -1.99
LDB3O75112 AC091179.1-201ENST00000461606 579 ntBASIC2.64□□□□□ -1.99
LDB3O75112 RPL9P9-202ENST00000466501 579 ntBASIC2.64□□□□□ -1.99
LDB3O75112 AC091826.1-201ENST00000514065 313 ntBASIC2.64□□□□□ -1.99
LDB3O75112 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.64□□□□□ -1.99
LDB3O75112 HSBP1P1-201ENST00000555205 166 ntBASIC2.64□□□□□ -1.99
LDB3O75112 MYL12BP1-201ENST00000569826 507 ntBASIC2.64□□□□□ -1.99
LDB3O75112 AC124312.5-201ENST00000604451 268 ntBASIC2.64□□□□□ -1.99
LDB3O75112 PRR13P7-201ENST00000605538 430 ntBASIC2.64□□□□□ -1.99
LDB3O75112 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.64□□□□□ -1.99
LDB3O75112 HMGB1P24-202ENST00000615653 685 ntBASIC2.64□□□□□ -1.99
LDB3O75112 UCA1.1-201ENST00000620952 75 ntBASIC2.64□□□□□ -1.99
LDB3O75112 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LDB3O75112 FAM35CP-201ENST00000554755 2470 ntBASIC2.63□□□□□ -1.99
LDB3O75112 SNORD50.1-201ENST00000362987 71 ntBASIC2.63□□□□□ -1.99
LDB3O75112 Y_RNA.307-201ENST00000365022 117 ntBASIC2.63□□□□□ -1.99
LDB3O75112 DYNLT3P1-201ENST00000378574 347 ntBASIC2.63□□□□□ -1.99
LDB3O75112 RPL21P1-201ENST00000399532 476 ntBASIC2.63□□□□□ -1.99
LDB3O75112 RNU6-101P-201ENST00000410323 104 ntBASIC2.63□□□□□ -1.99
LDB3O75112 COTL1P1-201ENST00000422309 375 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AL358075.3-201ENST00000426289 226 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.63□□□□□ -1.99
LDB3O75112 AC099799.1-201ENST00000439809 192 ntBASIC2.63□□□□□ -1.99
LDB3O75112 DAP3P1-201ENST00000441522 278 ntBASIC2.63□□□□□ -1.99
LDB3O75112 DYNLT3P2-201ENST00000442517 295 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.63□□□□□ -1.99
LDB3O75112 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LDB3O75112 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.63□□□□□ -1.99
LDB3O75112 RNU6-1037P-201ENST00000459571 107 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.63□□□□□ -1.99
LDB3O75112 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.63□□□□□ -1.99
LDB3O75112 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.63□□□□□ -1.99
LDB3O75112 RNU6-377P-201ENST00000515965 102 ntBASIC2.63□□□□□ -1.99
LDB3O75112 Y_RNA.668-201ENST00000516233 93 ntBASIC2.63□□□□□ -1.99
LDB3O75112 Y_RNA.680-201ENST00000516441 93 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AC006199.1-201ENST00000548728 219 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AC010620.2-201ENST00000600135 313 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AL355877.2-201ENST00000603670 358 ntBASIC2.63□□□□□ -1.99
LDB3O75112 AC004832.5-201ENST00000608677 401 ntBASIC2.63□□□□□ -1.99
LDB3O75112 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.63□□□□□ -1.99
LDB3O75112 U4.7-201ENST00000638126 106 ntBASIC2.63□□□□□ -1.99
LDB3O75112 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
LDB3O75112 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LDB3O75112 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LDB3O75112 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LDB3O75112 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
LDB3O75112 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.62□□□□□ -1.99
LDB3O75112 Y_RNA.39-201ENST00000362620 98 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU6-942P-201ENST00000363002 107 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU6-525P-201ENST00000363685 104 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU1-100P-201ENST00000365255 165 ntBASIC2.62□□□□□ -1.99
LDB3O75112 SNORD21-201ENST00000383953 95 ntBASIC2.62□□□□□ -1.99
LDB3O75112 Y_RNA.577-201ENST00000384794 101 ntBASIC2.62□□□□□ -1.99
LDB3O75112 MIR521-1-201ENST00000384902 87 ntBASIC2.62□□□□□ -1.99
LDB3O75112 MIR23A-201ENST00000385245 73 ntBASIC2.62□□□□□ -1.99
LDB3O75112 MT-TW-201ENST00000387382 68 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AL590004.2-201ENST00000404787 371 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU2-49P-201ENST00000410666 184 ntBASIC2.62□□□□□ -1.99
LDB3O75112 BMS1P22-201ENST00000414726 313 ntBASIC2.62□□□□□ -1.99
LDB3O75112 ELOCP20-201ENST00000422460 345 ntBASIC2.62□□□□□ -1.99
LDB3O75112 MTND3P9-201ENST00000429526 346 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AC087499.2-201ENST00000432861 149 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AC107083.1-201ENST00000439643 279 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AC025750.2-201ENST00000442609 450 ntBASIC2.62□□□□□ -1.99
LDB3O75112 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.62□□□□□ -1.99
LDB3O75112 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.62□□□□□ -1.99
LDB3O75112 RPS29P27-201ENST00000463711 170 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AC003982.1-202ENST00000469928 248 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU6-475P-201ENST00000516073 104 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU6-307P-201ENST00000516743 106 ntBASIC2.62□□□□□ -1.99
LDB3O75112 RNU6-1271P-201ENST00000517049 105 ntBASIC2.62□□□□□ -1.99
LDB3O75112 Y_RNA.715-201ENST00000517082 110 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.62□□□□□ -1.99
LDB3O75112 AC040926.1-201ENST00000530195 238 ntBASIC2.62□□□□□ -1.99
LDB3O75112 EIF4BP1-201ENST00000554881 351 ntBASIC2.62□□□□□ -1.99
LDB3O75112 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.62□□□□□ -1.99
LDB3O75112 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.62□□□□□ -1.99
LDB3O75112 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.62□□□□□ -1.99
LDB3O75112 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.62□□□□□ -1.99
LDB3O75112 MIR5701-3-201ENST00000578890 82 ntBASIC2.62□□□□□ -1.99
LDB3O75112 MIR4273-201ENST00000582824 84 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms