Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MT-TQ-201ENST00000387372 72 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 ELOCP9-201ENST00000418624 239 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AL353777.1-201ENST00000425552 326 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AC010153.1-201ENST00000432862 727 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AC243964.1-201ENST00000441814 261 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AC008628.1-201ENST00000508663 265 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 SNORA25.12-201ENST00000516202 82 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 RNU6-320P-201ENST00000516511 106 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 SUMO2P18-201ENST00000518873 252 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 MRPS36P5-201ENST00000551909 298 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AL158211.4-201ENST00000606988 584 ntBASIC-0.41□□□□□ -2.48
CCDC88BA6NC98 AL390237.1-201ENST00000404226 1415 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 RNU6-862P-201ENST00000362804 105 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 RNU6-529P-201ENST00000363383 104 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 MIR421-201ENST00000365696 85 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 Y_RNA.597-201ENST00000410463 100 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 RNU1-131P-201ENST00000458943 161 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 AC016256.1-201ENST00000547971 354 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 MIR4709-201ENST00000577272 72 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 AC084824.4-201ENST00000620106 731 ntBASIC-0.42□□□□□ -2.48
CCDC88BA6NC98 SNORA9.1-201ENST00000362412 131 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 RNA5SP128-201ENST00000365305 116 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 MTCO2P34-201ENST00000421994 607 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 RNU6-333P-201ENST00000459117 107 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 RNU6-1183P-201ENST00000517054 60 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 VN1R83P-201ENST00000595685 445 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AC093788.1-201ENST00000609356 927 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AL078595.3-201ENST00000623815 1166 ntBASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.43□□□□□ -2.48
CCDC88BA6NC98 SNORA63D-201ENST00000364359 132 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 RNU6-163P-201ENST00000384396 106 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 RNFT1P2-201ENST00000443064 757 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 NFU1P2-201ENST00000448700 469 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 PAXBP1P1-201ENST00000449315 447 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 AC117525.1-201ENST00000515228 503 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 RN7SKP287-201ENST00000516546 266 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 RNU6-922P-201ENST00000516753 99 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 RNU6-889P-201ENST00000517189 103 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 AC018630.3-201ENST00000542637 96 ntBASIC-0.44□□□□□ -2.48
CCDC88BA6NC98 ENSAP3-201ENST00000312710 333 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 MIR153-2-201ENST00000385225 87 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 C1DP2-201ENST00000418167 426 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 SEPT7P5-201ENST00000434048 306 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 SEPT7P4-201ENST00000437076 306 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 NDUFA5P7-201ENST00000452914 242 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 C1DP4-201ENST00000455429 424 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 SCARNA8-201ENST00000515924 131 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 AC093012.1-202ENST00000549403 582 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 AC064807.4-201ENST00000607201 407 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 GHRLOS.1-201ENST00000610995 70 ntBASIC-0.45□□□□□ -2.48
CCDC88BA6NC98 snoU2_19.1-201ENST00000362361 80 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 SNORD116-13-201ENST00000384408 92 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 USP9YP14-201ENST00000430663 563 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 GPM6BP2-201ENST00000432046 144 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 GPM6BP1-201ENST00000446387 144 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 OARD1-209ENST00000471367 401 ntTSL 2 BASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 AC074198.2-201ENST00000508153 258 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 RNU6-528P-201ENST00000516926 100 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 AC011979.2-201ENST00000527568 352 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 AC007363.1-201ENST00000604736 620 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 AP000943.4-201ENST00000622912 357 ntBASIC-0.46□□□□□ -2.48
CCDC88BA6NC98 SNORA4.2-201ENST00000365313 147 ntBASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 RPS26P42-201ENST00000413485 326 ntBASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 MTND4LP11-201ENST00000422184 280 ntBASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 MTCO3P29-201ENST00000432119 779 ntBASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 AL020997.3-201ENST00000602843 359 ntBASIC-0.47□□□□□ -2.48
CCDC88BA6NC98 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC-0.47□□□□□ -2.49
CCDC88BA6NC98 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU6-1123P-201ENST00000362347 106 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RNU4-9P-201ENST00000364951 139 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RN7SKP266-201ENST00000410232 287 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 MRPS18CP6-201ENST00000423587 223 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 AC005345.1-201ENST00000431868 217 ntBASIC-0.48□□□□□ -2.49
CCDC88BA6NC98 RPL23AP50-201ENST00000434149 455 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 157.2 ms