Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AL162713.1-201ENST00000604480 262 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AC140479.6-201ENST00000633535 357 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AC106871.1-201ENST00000568324 3102 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.287-201ENST00000364853 94 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-376P-201ENST00000384731 106 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 MIR3074-201ENST00000384885 81 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 MIR141-201ENST00000384975 95 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 EI24P2-201ENST00000397776 1076 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RPS16P5-201ENST00000406501 404 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 MIR1179-201ENST00000408703 91 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AL160275.2-201ENST00000412010 394 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AC245028.1-201ENST00000423259 256 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AC011998.1-201ENST00000433403 117 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AL121914.1-201ENST00000450188 156 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AC009220.1-201ENST00000451614 275 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RNU7-197P-201ENST00000458836 62 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP310-201ENST00000459084 116 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RN7SL585P-201ENST00000470538 280 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AC103975.1-201ENST00000482506 483 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP154-201ENST00000516193 111 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-659P-201ENST00000516454 104 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 MIR3609-201ENST00000582661 80 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 MIR3136-201ENST00000583498 78 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 AL391813.1-201ENST00000603098 260 ntBASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HIF3AQ9Y2N7 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 MFSD8-216ENST00000641147 4009 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.43-201ENST00000362670 111 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNU1-64P-201ENST00000365443 163 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-969P-201ENST00000383900 105 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 SNORA18.3-201ENST00000384122 132 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 MIR192-201ENST00000384915 110 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNY4P18-201ENST00000391107 89 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 MIR320B2-201ENST00000408479 138 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 CYCSP48-201ENST00000417124 323 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AC069285.2-201ENST00000440210 275 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AL161651.1-201ENST00000440882 223 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RN7SL98P-201ENST00000462271 300 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AC092991.1-201ENST00000477176 376 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 CYCTP-201ENST00000504253 315 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AL592156.1-201ENST00000508758 304 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP76-201ENST00000516277 87 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP73-201ENST00000516744 108 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 RNU2-56P-201ENST00000516826 190 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AC136628.3-201ENST00000521868 290 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 LARP7P3-201ENST00000579888 337 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AL078604.3-201ENST00000615580 211 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 MIR7703-201ENST00000620784 77 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 MIR7702-201ENST00000621931 59 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 SNORD98-201ENST00000636377 67 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 AC004944.1-201ENST00000517807 3059 ntBASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.84□□□□□ -1.79
HIF3AQ9Y2N7 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.84□□□□□ -1.8
HIF3AQ9Y2N7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HIF3AQ9Y2N7 ZNF702P-202ENST00000434269 1966 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RNU6-834P-201ENST00000362367 110 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RNA5SP388-201ENST00000362584 119 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 U1.1-201ENST00000384101 164 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 SNORA1.3-201ENST00000384676 136 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 MIR93-201ENST00000385024 80 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 MT-TT-201ENST00000387460 66 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AL031003.1-201ENST00000404229 172 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AL157831.1-201ENST00000426134 473 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AL591419.1-201ENST00000427423 339 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RPL23AP52-201ENST00000439311 478 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 RPL23AP58-201ENST00000440453 469 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 PHBP16-201ENST00000446318 950 ntBASIC3.83□□□□□ -1.8
HIF3AQ9Y2N7 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms