Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 ZNF299P-201ENST00000406845 1804 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 ADAM3A-203ENST00000461344 2157 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.48-201ENST00000362710 103 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-1280P-201ENST00000365211 107 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 SNORA9.2-201ENST00000365361 133 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.364-201ENST00000365532 101 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.496-201ENST00000384444 101 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RNU6-1245P-201ENST00000411130 106 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RPL19P1-201ENST00000411635 428 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 NUP35P1-201ENST00000422734 947 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC105272.1-201ENST00000438604 198 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SL429P-201ENST00000479090 223 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SL489P-201ENST00000486185 223 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SL327P-201ENST00000488659 223 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC116655.1-201ENST00000508324 901 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SKP43-201ENST00000516173 320 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 CR383656.8-201ENST00000549046 145 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC021739.1-201ENST00000559631 174 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 MIR5696-201ENST00000578474 85 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC020895.1-201ENST00000595362 272 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC005014.2-201ENST00000607795 599 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AC007485.1-201ENST00000616755 206 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 RN7SL853P-201ENST00000617250 223 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 GABRG2-229ENST00000641017 3628 ntBASIC3.17□□□□□ -1.9
SSX2IPQ9Y2D8 MTND4P1-201ENST00000457501 1466 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AC233263.6-201ENST00000631132 1963 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 SNORD116-20-201ENST00000384529 92 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 BTF3L4P2-201ENST00000392798 346 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 RNA5SP274-201ENST00000410484 108 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 RNA5SP184-201ENST00000411071 108 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AP000275.1-201ENST00000411943 390 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AL353997.1-201ENST00000432936 108 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AL135938.1-201ENST00000443141 297 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 GSTA11P-201ENST00000452866 669 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 RPS29P27-201ENST00000463711 170 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 RPS29P26-201ENST00000477483 171 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AC015911.1-201ENST00000495111 156 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 GNAI2P1-201ENST00000541815 315 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 AC092447.9-201ENST00000603395 144 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 HMGB1P24-202ENST00000615653 685 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 MIR3199-2-201ENST00000636243 86 ntBASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
SSX2IPQ9Y2D8 Y_RNA.39-201ENST00000362620 98 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 Y_RNA.80-201ENST00000362996 102 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 CD24P4-201ENST00000382840 243 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 Y_RNA.459-201ENST00000384251 102 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-784P-201ENST00000384330 106 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 Y_RNA.533-201ENST00000384596 114 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 AL160004.2-201ENST00000432935 350 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 RPL23AP58-201ENST00000440453 469 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 RPS12P18-201ENST00000442381 270 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 AC010099.1-201ENST00000455434 375 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 MRPL42P6-201ENST00000486397 371 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 AP000867.2-201ENST00000532468 320 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 HSPE1P20-201ENST00000538133 289 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 AC136443.5-201ENST00000603741 370 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 RPL23AP88-201ENST00000605759 454 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 AC024581.2-201ENST00000619986 252 ntBASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SSX2IPQ9Y2D8 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-858P-201ENST00000362436 107 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-595P-201ENST00000363944 107 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 SNORD56.5-201ENST00000364281 72 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-99P-201ENST00000364721 107 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-198P-201ENST00000384258 104 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNA5SP252-201ENST00000391131 119 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 FTH1P15-201ENST00000406984 280 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU6-1156P-201ENST00000410365 100 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU2-23P-201ENST00000410545 195 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RN7SKP284-201ENST00000411002 343 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 AL714022.1-201ENST00000439897 151 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 UBBP3-201ENST00000445497 241 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 MTND5P22-201ENST00000458380 195 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 RNU7-23P-201ENST00000459465 62 ntBASIC3.14□□□□□ -1.91
SSX2IPQ9Y2D8 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms