Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CBX3P7-201ENST00000532876 502 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC019159.1-201ENST00000605094 187 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 RNU6-91P-201ENST00000607774 107 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC024581.2-201ENST00000619986 252 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 AC099654.7-201ENST00000635788 2127 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 MTND4P27-201ENST00000450813 1354 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 MTND5P9-201ENST00000503854 1755 ntBASIC2.94□□□□□ -1.94
VPS4AQ9UN37 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC108206.1-201ENST00000570186 4159 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RNA5SP432-201ENST00000362480 116 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.28-201ENST00000362554 111 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 SNORD56.1-201ENST00000362913 68 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RNU6-595P-201ENST00000363944 107 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 SNORA71.1-201ENST00000364523 117 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.533-201ENST00000384596 114 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC124916.1-201ENST00000444020 547 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RPL39P40-201ENST00000445481 146 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AL035666.1-201ENST00000446195 348 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC068781.1-201ENST00000488231 618 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RPL17P19-201ENST00000489069 552 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RN7SKP272-201ENST00000516988 232 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC090897.2-201ENST00000581715 130 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 MIR4273-201ENST00000582824 84 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AL033523.1-201ENST00000605153 153 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AL359198.2-201ENST00000611836 194 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 AC097372.5-201ENST00000623665 376 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 ZNF299P-201ENST00000406845 1804 ntBASIC2.93□□□□□ -1.94
VPS4AQ9UN37 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
VPS4AQ9UN37 RBBP8P1-201ENST00000449447 1844 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 SNORA22B-201ENST00000383876 138 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 SNORD15B-201ENST00000384714 146 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RNU6-19P-201ENST00000384718 107 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 NUP35P1-201ENST00000422734 947 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RPL23AP58-201ENST00000440453 469 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 AC008885.1-201ENST00000514930 301 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RNU5F-8P-201ENST00000515941 111 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RNA5SP356-201ENST00000515972 94 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RNU6-56P-201ENST00000516986 93 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 RNU6-699P-201ENST00000517081 110 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 MIR3162-201ENST00000581818 82 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 AC060766.3-201ENST00000591442 263 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 IGHVIII-44-202ENST00000636235 289 ntBASIC2.92□□□□□ -1.94
VPS4AQ9UN37 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
VPS4AQ9UN37 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 RNU6-858P-201ENST00000362436 107 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 RNU6-1285P-201ENST00000363480 105 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.202-201ENST00000364083 110 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 RNU1-115P-201ENST00000365329 160 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 SNORA33.2-201ENST00000365413 134 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 BTF3L4P2-201ENST00000392798 346 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AC008267.5-201ENST00000424928 265 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AC016256.1-201ENST00000547971 354 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 ELOCP29-201ENST00000588193 334 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AC107871.2-201ENST00000612894 502 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AL159153.1-201ENST00000619688 317 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 AL136360.1-201ENST00000503377 1900 ntBASIC2.91□□□□□ -1.94
VPS4AQ9UN37 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS4AQ9UN37 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
VPS4AQ9UN37 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.94
VPS4AQ9UN37 Y_RNA.48-201ENST00000362710 103 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RNY1P16-201ENST00000363063 111 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RNU6-1141P-201ENST00000364520 107 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RNU6-1032P-201ENST00000384100 107 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RNU6-1222P-201ENST00000384615 107 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 Y_RNA.577-201ENST00000384794 101 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 SNORD67-201ENST00000390833 111 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 RN7SKP61-201ENST00000410642 295 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 CYCSP48-201ENST00000417124 323 ntBASIC2.9□□□□□ -1.95
VPS4AQ9UN37 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS4AQ9UN37 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 139.8 ms