Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC092989.1-201ENST00000481235 277 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC087854.1-201ENST00000519706 414 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 CYCSP26-201ENST00000534107 320 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 PSMA3P-201ENST00000555485 635 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 MIR5694-201ENST00000581190 76 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 AC091135.1-201ENST00000585943 307 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 VN1R107P-201ENST00000601784 209 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 MIR6873-201ENST00000622788 63 ntBASIC2.36□□□□□ -2.03
CPSF3Q9UKF6 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 RNU6-655P-201ENST00000362858 107 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.453-201ENST00000384223 109 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.599-201ENST00000410489 109 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.619-201ENST00000410951 90 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 SNAP23P1-201ENST00000433229 246 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 RNU7-66P-201ENST00000459469 62 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC104576.1-201ENST00000524225 88 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC064836.2-201ENST00000609491 462 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 MIR6132-201ENST00000622083 109 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 AC007792.1-201ENST00000623023 402 ntBASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
CPSF3Q9UKF6 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 U8.2-201ENST00000363156 134 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 Y_RNA.373-201ENST00000365600 103 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 RNU6-877P-201ENST00000383868 107 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 RNU6-1222P-201ENST00000384615 107 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 RNU6-1245P-201ENST00000411130 106 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AL161788.1-201ENST00000441805 169 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AL031659.1-201ENST00000447075 539 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 CKS1BP2-201ENST00000497342 240 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 MTCYBP18-201ENST00000501056 747 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 RPL39P5-202ENST00000512505 151 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 ELOCP5-201ENST00000604924 333 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 AC005858.4-201ENST00000623191 700 ntBASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CPSF3Q9UKF6 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1285P-201ENST00000363480 105 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1210P-201ENST00000363775 107 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 U3.13-201ENST00000364804 214 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 SNORD32A-201ENST00000364805 84 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 RNU6-43P-201ENST00000384302 107 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 SNORA64-201ENST00000384674 134 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 Y_RNA.573-201ENST00000384763 105 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AL023284.1-201ENST00000403956 276 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 SNORA11.4-201ENST00000408823 129 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 EIF1P1-201ENST00000421436 341 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AL359672.1-201ENST00000442302 409 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 MTCO2P3-201ENST00000442543 421 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AL353752.1-201ENST00000454946 260 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AC008628.2-201ENST00000502605 298 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 SNORA48.11-201ENST00000517015 89 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AP000763.2-201ENST00000540641 163 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 RPS3AP23-202ENST00000574601 686 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 MIR4648-201ENST00000580107 72 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AC009314.1-201ENST00000603871 304 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AL355297.2-201ENST00000604792 129 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AC007014.2-201ENST00000615581 479 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AC090617.10-201ENST00000624308 134 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 MIR3662-201ENST00000637030 95 ntBASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.33□□□□□ -2.04
CPSF3Q9UKF6 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 RNU6-254P-201ENST00000363377 107 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 RNU6-1329P-201ENST00000365664 107 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 SNORA6-201ENST00000384033 151 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 CBX3P9-201ENST00000402326 552 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AL591034.2-201ENST00000402839 359 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 MIR1277-201ENST00000408536 78 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 RNA5SP270-201ENST00000411361 118 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 MTND1P23-201ENST00000416931 372 ntBASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.32□□□□□ -2.04
CPSF3Q9UKF6 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 190.9 ms