Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNU6-692P-201ENST00000384496 107 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 MTCO3P40-201ENST00000392516 676 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 CALM2P3-201ENST00000400429 449 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 RNU2-16P-201ENST00000410712 136 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 RNU2-40P-201ENST00000410833 196 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 RNU6-1245P-201ENST00000411130 106 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC055731.1-201ENST00000474387 401 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 RPL30P1-201ENST00000488676 339 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC109479.2-201ENST00000517842 174 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC034114.1-201ENST00000520293 285 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 MIR4287-201ENST00000579398 78 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC103987.3-201ENST00000582071 292 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AL136363.2-201ENST00000604173 851 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 AL670379.2-201ENST00000604983 252 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 RNU6-85P-201ENST00000605989 107 ntBASIC2.05□□□□□ -2.08
VPS54Q9P1Q0 SNORA69-201ENST00000383895 132 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RNU6-1222P-201ENST00000384615 107 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RNA5SP219-201ENST00000390940 113 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 SNORD37.1-201ENST00000390968 65 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RN7SKP284-201ENST00000411002 343 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 HMGN2P19-201ENST00000425149 265 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AL645568.3-201ENST00000433683 316 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 DNAJC19P4-201ENST00000440115 345 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC013470.1-201ENST00000453438 462 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 MTCO3P38-201ENST00000468910 766 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC083798.1-201ENST00000472671 131 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC116337.1-201ENST00000509680 687 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RNA5SP401-201ENST00000515920 127 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RNU6-295P-201ENST00000516901 104 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC091135.1-201ENST00000585943 307 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC008749.1-201ENST00000597650 306 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AL031274.2-201ENST00000599419 203 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC063943.3-201ENST00000615562 356 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 uc_338.20-201ENST00000621563 178 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC084768.2-201ENST00000622736 221 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 AC241585.2-209ENST00000638217 143 ntBASIC2.04□□□□□ -2.08
VPS54Q9P1Q0 RNU6-944P-201ENST00000364023 107 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 RNU4-24P-201ENST00000364565 139 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 Y_RNA.436-201ENST00000384097 102 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AL117339.3-201ENST00000418733 162 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 VN1R108P-201ENST00000431580 830 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 PMCHL2-203ENST00000457791 237 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC107032.1-201ENST00000485945 480 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AK3P2-201ENST00000507976 429 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 RNA5SP137-201ENST00000516833 135 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 RNU2-19P-201ENST00000517288 84 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC069113.1-201ENST00000517763 267 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC090115.3-201ENST00000553218 849 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AL118558.2-201ENST00000556294 238 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AL158827.2-201ENST00000602494 330 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 MIR8081-201ENST00000611533 95 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AC091932.3-201ENST00000624223 323 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 AL691447.3-201ENST00000635020 330 ntBASIC2.03□□□□□ -2.08
VPS54Q9P1Q0 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AP006437.1-201ENST00000641440 3685 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 CENPCP1-201ENST00000533085 2578 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-1085P-201ENST00000363576 107 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-1322P-201ENST00000364309 107 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-38P-201ENST00000384085 107 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 Y_RNA.517-201ENST00000384551 106 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 MIR676-201ENST00000390702 67 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU2-32P-201ENST00000411193 191 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 TPTE2P5-203ENST00000458118 728 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-333P-201ENST00000459117 107 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-261P-201ENST00000459506 102 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC079140.5-201ENST00000507882 310 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC009646.1-201ENST00000510455 318 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU5F-2P-201ENST00000516066 82 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-835P-201ENST00000516974 104 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 RNU6-667P-201ENST00000517186 102 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 NDUFA5P6-201ENST00000542110 379 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC011494.1-201ENST00000596454 237 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 VN1R80P-201ENST00000597126 338 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC097065.2-201ENST00000608159 533 ntBASIC2.02□□□□□ -2.09
VPS54Q9P1Q0 AC093783.1-201ENST00000612976 329 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms