Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU4-9P-201ENST00000364951 139 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 SNORA29-201ENST00000384183 140 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 Y_RNA.510-201ENST00000384511 114 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 RN7SKP61-201ENST00000410642 295 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC009414.1-201ENST00000427200 443 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC112492.4-201ENST00000456549 352 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AL441985.1-201ENST00000457727 251 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AF186996.7-201ENST00000492781 209 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC015911.1-201ENST00000495111 156 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC016632.1-201ENST00000503994 196 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 RNU7-175P-201ENST00000515915 61 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 RNU6-764P-201ENST00000516396 105 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC144568.1-201ENST00000520139 137 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 HSBP1P1-201ENST00000555205 166 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 RPS15AP11-201ENST00000594193 385 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AL355877.2-201ENST00000603670 358 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC091903.1-201ENST00000624322 454 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 ZNF72P-201ENST00000425869 1908 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC103988.1-201ENST00000566382 2177 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 AC000403.1-201ENST00000613696 3585 ntBASIC3.22□□□□□ -1.89
TDP1Q9NUW8 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
TDP1Q9NUW8 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC007496.3-201ENST00000624987 3443 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 MIR22-201ENST00000362190 85 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 RNU6-1285P-201ENST00000363480 105 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 RNU6-142P-201ENST00000384019 107 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 RNU1-101P-201ENST00000391171 127 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 SNORA48.8-201ENST00000391324 134 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 MIR190B-201ENST00000401119 79 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.605-201ENST00000410577 105 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC107083.1-201ENST00000439643 279 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 GPM6BP3-201ENST00000442797 145 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 snoU13.30-201ENST00000458951 104 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AP001324.2-201ENST00000461163 319 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC021146.2-201ENST00000504736 556 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 RN7SKP272-201ENST00000516988 232 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC093331.1-201ENST00000521474 169 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC016256.1-201ENST00000547971 354 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC007375.1-201ENST00000554513 578 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 RPL23AP78-201ENST00000599928 470 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC100812.1-201ENST00000607622 580 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 MIR6852-201ENST00000621699 66 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC110079.1-202ENST00000635213 138 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AL450472.1-202ENST00000637286 180 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 AC002543.1-201ENST00000299783 1954 ntBASIC3.21□□□□□ -1.9
TDP1Q9NUW8 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.21□□□□□ -1.9
TDP1Q9NUW8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 RNU5B-2P-201ENST00000363036 113 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 RNU6-799P-201ENST00000363567 107 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 SNORA36A-201ENST00000384221 132 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.455-201ENST00000384230 98 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 RNA5SP354-201ENST00000391247 136 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AL356057.3-201ENST00000402607 340 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 TRIAP1P1-201ENST00000427062 225 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC078809.1-201ENST00000427601 140 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC022018.1-201ENST00000430685 241 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC244670.1-201ENST00000436879 112 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC025750.2-201ENST00000442609 450 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC009296.1-201ENST00000443146 155 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.706-201ENST00000516933 99 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC006600.1-201ENST00000572529 153 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 MIR5571-201ENST00000577998 113 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 MIR5188-201ENST00000583467 113 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC099778.2-201ENST00000610904 211 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AL359198.2-201ENST00000611836 194 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 MIR7106-201ENST00000612419 65 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AL138825.1-201ENST00000618587 192 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AC007792.1-201ENST00000623023 402 ntBASIC3.2□□□□□ -1.9
TDP1Q9NUW8 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.2□□□□□ -1.9
TDP1Q9NUW8 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 Y_RNA.389-201ENST00000383924 113 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 SNORD67-201ENST00000390833 111 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 SNORA69.1-201ENST00000390904 137 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
TDP1Q9NUW8 BX679664.1-201ENST00000434429 253 ntBASIC3.19□□□□□ -1.9
TDP1Q9NUW8 OR2AQ1P-201ENST00000451972 200 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms