Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 UCA1.1-201ENST00000620952 75 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 Z69720.2-201ENST00000624755 279 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 U6.99-201ENST00000637524 83 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 RNU6-1159P-201ENST00000362933 107 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 RNU1-51P-201ENST00000365345 176 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 SNORA80E-201ENST00000384744 137 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 RNU4-14P-201ENST00000410858 122 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AL365400.1-201ENST00000431854 640 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 snoU109.2-201ENST00000459316 135 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 RPS27P26-201ENST00000494583 239 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC092436.3-201ENST00000511788 257 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.687-201ENST00000516558 91 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 RNU6-1332P-201ENST00000516666 104 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AP005639.2-201ENST00000527592 928 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC025423.5-201ENST00000550230 219 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 ELOCP5-201ENST00000604924 333 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 RNU6-85P-201ENST00000605989 107 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC064836.2-201ENST00000609491 462 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 AC073308.1-201ENST00000623696 305 ntBASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.37□□□□□ -2.03
UPF3AQ9H1J1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MIRLET7G-201ENST00000362280 84 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-37P-201ENST00000362692 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-942P-201ENST00000363002 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU4-73P-201ENST00000363164 141 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-11P-201ENST00000364234 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.356-201ENST00000365475 113 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-898P-201ENST00000365627 104 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-25P-201ENST00000383873 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 SNORD116-11-201ENST00000383882 92 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-1-201ENST00000383898 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-48P-201ENST00000384161 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-36P-201ENST00000384172 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-4P-201ENST00000384205 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-5P-201ENST00000384238 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-198P-201ENST00000384258 104 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-72P-201ENST00000384285 79 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-3P-201ENST00000384314 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-16P-201ENST00000384385 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-15P-201ENST00000384534 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-2-201ENST00000384627 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-29P-201ENST00000384637 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-9-201ENST00000384776 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-33P-201ENST00000384793 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MIR767-201ENST00000390228 109 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MIR548K-201ENST00000408406 116 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-1140P-201ENST00000410517 106 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RPS3AP52-201ENST00000435639 297 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MTND4LP16-201ENST00000440828 295 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MTND1P17-201ENST00000448961 204 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RPL26P9-201ENST00000457466 433 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU7-138P-201ENST00000459479 64 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 AC008526.1-201ENST00000509149 338 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MTND3P22-201ENST00000510932 243 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.682-201ENST00000516457 100 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-566P-201ENST00000516790 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNA5SP454-201ENST00000517231 127 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 POLR3GP2-201ENST00000588366 668 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 OR1M4P-201ENST00000589199 287 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RNU6-6P-201ENST00000606623 107 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 uc_338.5-201ENST00000611839 155 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MIR6845-201ENST00000613182 61 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 uc_338.15-201ENST00000615470 191 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 AL359314.1-201ENST00000616913 261 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 MIR6134-201ENST00000617606 109 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 RMST_7.1-201ENST00000621935 268 ntBASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.36□□□□□ -2.03
UPF3AQ9H1J1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.61-201ENST00000362835 102 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 RNU6-797P-201ENST00000363101 109 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 RNU6-95P-201ENST00000384697 107 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MIR524-201ENST00000385242 87 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MIR548F5-201ENST00000408421 86 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 NDUFS5P4-201ENST00000412983 318 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 SNORD56-201ENST00000413522 71 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MTND3P23-201ENST00000431980 347 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 RPS15AP7-201ENST00000439294 405 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AL359672.1-201ENST00000442302 409 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 HMGN2P10-201ENST00000448085 265 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 MTND5P5-201ENST00000503764 376 ntBASIC2.35□□□□□ -2.03
UPF3AQ9H1J1 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms