Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNU6-23P-201ENST00000363283 107 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNU6-1285P-201ENST00000363480 105 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNU6-336P-201ENST00000364891 107 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNU6-160P-201ENST00000384591 107 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNU2-9P-201ENST00000410194 145 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP338-201ENST00000410495 85 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNU6-321P-201ENST00000410912 106 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP501-201ENST00000410990 112 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 SNORD56-201ENST00000413522 71 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AC003989.2-201ENST00000440224 169 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 MTND3P7-201ENST00000474435 343 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AP005435.4-201ENST00000529514 284 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 SUB1P2-201ENST00000556401 297 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 MIR4713-201ENST00000582691 75 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 RSL24D1P11-201ENST00000591045 491 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 NIFKP6-201ENST00000598115 845 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 APOOP1-201ENST00000604695 592 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 AC123912.5-201ENST00000605470 343 ntBASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
HDDC3Q8N4P3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
HDDC3Q8N4P3 WWP1P1-201ENST00000466609 2769 ntBASIC1.9□□□□□ -2.1
HDDC3Q8N4P3 RNU6-428P-201ENST00000362942 107 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 RNU6-1141P-201ENST00000364520 107 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 SNORD13-201ENST00000459299 104 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC079382.1-201ENST00000493346 557 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 RNU2-69P-201ENST00000516061 100 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 RNA5SP490-201ENST00000517141 136 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC008536.2-201ENST00000607284 349 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 AC245060.5-201ENST00000610778 3293 ntBASIC1.9□□□□□ -2.11
HDDC3Q8N4P3 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RNU6-457P-201ENST00000363999 107 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RNU6-43P-201ENST00000384302 107 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RNU6-692P-201ENST00000384496 107 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 Y_RNA.508-201ENST00000384502 114 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RNU6-606P-201ENST00000384721 111 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 MIR499A-201ENST00000384903 122 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 SNORA17.3-201ENST00000391159 129 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 SNORA12-201ENST00000391162 147 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 BTF3P4-201ENST00000418852 495 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AL590135.1-201ENST00000422215 156 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC019205.3-201ENST00000424573 156 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RPS6P15-201ENST00000431996 751 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC244670.1-201ENST00000436879 112 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC092473.1-201ENST00000441098 221 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC016700.2-201ENST00000446011 156 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 GMFBP1-201ENST00000467831 427 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC015911.1-201ENST00000495111 156 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 TRMT112P2-201ENST00000512910 132 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 MIR449C-201ENST00000516047 92 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 MIR4448-201ENST00000584360 86 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC008752.3-201ENST00000588113 712 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC040904.1-201ENST00000590850 223 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 AC110760.3-201ENST00000598794 467 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.89□□□□□ -2.11
HDDC3Q8N4P3 MTND4P14-201ENST00000435799 1354 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 RNU4-15P-201ENST00000362613 141 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 SNORA25.9-201ENST00000365087 128 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 RNU6-142P-201ENST00000384019 107 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 RNU6-1127P-201ENST00000384580 107 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AL033519.2-201ENST00000403958 392 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AC010975.2-201ENST00000427781 588 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 C1DP4-201ENST00000455429 424 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 SCARNA18-201ENST00000459004 134 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 MTCO2P6-201ENST00000463134 685 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AK3P2-201ENST00000507976 429 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AC069113.1-201ENST00000517763 267 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AL356057.1-201ENST00000533798 831 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 MIR3913-1-201ENST00000577744 102 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AC002044.1-201ENST00000606707 158 ntBASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
HDDC3Q8N4P3 AP000560.1-201ENST00000624150 1937 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 SNORA16.2-201ENST00000390991 127 ntBASIC1.87□□□□□ -2.11
HDDC3Q8N4P3 RNU2-29P-201ENST00000410423 189 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms