Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SKA3Q8IX90 SEPT14P4-201ENST00000513445 186 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 SNORA14.1-201ENST00000516113 141 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 RNU6-1281P-201ENST00000516223 105 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 RNU6-506P-201ENST00000516553 94 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 FO082796.1-201ENST00000523795 183 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 CYCSP27-201ENST00000527643 293 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AK6P1-201ENST00000540219 478 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AP000763.2-201ENST00000540641 163 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC027807.1-201ENST00000559921 996 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 MIR3126-201ENST00000577443 74 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.78□□□□□ -2.12
SKA3Q8IX90 AL096840.1-201ENST00000603287 93 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 YWHAEP7-203ENST00000622054 312 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC009487.4-201ENST00000624969 3585 ntBASIC1.78□□□□□ -2.12
SKA3Q8IX90 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
SKA3Q8IX90 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.78□□□□□ -2.13
SKA3Q8IX90 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 RNU6-944P-201ENST00000364023 107 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 SNORA25B-201ENST00000365507 128 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 SNORA70B-201ENST00000384210 135 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RNU6-43P-201ENST00000384302 107 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RPS29P13-201ENST00000402041 169 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 RPS15AP10-201ENST00000432472 382 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 RNU6-1208P-201ENST00000459588 107 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 RPL21P99-201ENST00000480369 423 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RPL30P1-201ENST00000488676 339 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC018868.1-201ENST00000491307 315 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 SNORA19.2-201ENST00000516013 114 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RNU1-41P-201ENST00000516161 162 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RNU1-48P-201ENST00000516400 162 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 RN7SKP256-201ENST00000517201 314 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC115990.1-201ENST00000526957 301 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC025165.5-201ENST00000602802 578 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC009314.1-201ENST00000603871 304 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC012557.2-201ENST00000605919 418 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC092807.2-201ENST00000609367 243 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC103705.1-201ENST00000619013 241 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 AC068137.3-201ENST00000639191 341 ntBASIC1.77□□□□□ -2.13
SKA3Q8IX90 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SKA3Q8IX90 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SKA3Q8IX90 MIR29B2-201ENST00000385055 81 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 MIR561-201ENST00000385216 97 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 MIR676-201ENST00000390702 67 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU2-2P-201ENST00000410396 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU6-1068P-201ENST00000410958 103 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 SNAP23P1-201ENST00000433229 246 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 MTND3P16-201ENST00000452205 344 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC055731.1-201ENST00000474387 401 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RPS29P21-201ENST00000496272 170 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU5F-2P-201ENST00000516066 82 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU6-314P-201ENST00000516574 104 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU6-323P-201ENST00000521915 107 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC025423.5-201ENST00000550230 219 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 MIR3122-201ENST00000577243 73 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 MIR5089-201ENST00000580047 84 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 VN1R107P-201ENST00000601784 209 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC013412.1-201ENST00000610687 192 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.15-201ENST00000611544 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.16-201ENST00000613119 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.12-201ENST00000613778 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.20-201ENST00000613956 192 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.9-201ENST00000615427 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.11-201ENST00000616345 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.2-201ENST00000616535 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.3-201ENST00000617785 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.19-201ENST00000618602 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 RNU2-1-201ENST00000618664 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.6-201ENST00000619225 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.5-201ENST00000619465 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 U2.10-201ENST00000620268 191 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 AC091932.3-201ENST00000624223 323 ntBASIC1.76□□□□□ -2.13
SKA3Q8IX90 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
SKA3Q8IX90 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SKA3Q8IX90 RNU6-1285P-201ENST00000363480 105 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 Y_RNA.231-201ENST00000364358 102 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 RNU6-483P-201ENST00000384088 108 ntBASIC1.75□□□□□ -2.13
SKA3Q8IX90 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SKA3Q8IX90 RNU2-32P-201ENST00000411193 191 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 223.6 ms