Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC109810.1-201ENST00000534066 224 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 AC095057.3-201ENST00000567102 1157 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 AC023827.1-201ENST00000569247 97 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 BNIP3P33-201ENST00000598912 569 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 DPPA3P3-201ENST00000603842 430 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 AC099654.9-201ENST00000637055 678 ntBASIC-0.57□□□□□ -2.5
LINC00643Q86TS7 ZNF736P9Y-201ENST00000439586 1345 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 SNORA40.8-201ENST00000411034 126 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 RPL21P24-201ENST00000413752 448 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 MTATP6P16-201ENST00000434543 526 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC245047.8-201ENST00000456455 284 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 RPS3AP17-201ENST00000472594 777 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 HMGB1P28-201ENST00000507778 552 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC112187.2-201ENST00000604345 283 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC009268.2-201ENST00000621925 457 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 AC092656.1-203ENST00000624134 423 ntBASIC-0.58□□□□□ -2.5
LINC00643Q86TS7 RNA5SP126-201ENST00000365092 109 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 RNU6-302P-201ENST00000365249 107 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 TRIM60P5Y-201ENST00000413946 574 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AL139421.1-201ENST00000423010 169 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 RAC1P6-201ENST00000423911 575 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC013262.1-201ENST00000426710 252 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 ELOCP3-201ENST00000439303 348 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 OFD1P3Y-201ENST00000453312 783 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 snoU13.23-201ENST00000458863 104 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 TMEM251P1-201ENST00000503717 318 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 RNA5SP135-201ENST00000517019 125 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC009902.1-201ENST00000519351 183 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AP000889.1-201ENST00000530968 660 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC015712.3-201ENST00000559380 164 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 RPL23AP91-201ENST00000569211 455 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC112191.3-201ENST00000604371 277 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC008759.3-201ENST00000613300 508 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC-0.59□□□□□ -2.5
LINC00643Q86TS7 DBF4P1-201ENST00000412976 1892 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MIR610-201ENST00000385139 96 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RSL24D1P8-201ENST00000434442 492 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MTCO3P45-201ENST00000443036 613 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 AC026410.2-201ENST00000460281 156 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RPL23AP54-201ENST00000495129 419 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 AC104136.1-201ENST00000512969 394 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RNU1-86P-201ENST00000516108 154 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RNU6-320P-201ENST00000516511 106 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RN7SKP287-201ENST00000516546 266 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 RNU1-107P-201ENST00000516617 154 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MTND2P7-201ENST00000521337 640 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 SNORA59B-202ENST00000578183 701 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MIR4524B-201ENST00000581569 115 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 AL929325.1-201ENST00000603096 117 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 uc_338.34-201ENST00000617467 174 ntBASIC-0.6□□□□□ -2.51
LINC00643Q86TS7 MIR103A2-201ENST00000362154 78 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AL353777.1-201ENST00000425552 326 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 FO393414.1-201ENST00000428697 1184 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AC092170.1-201ENST00000440211 356 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 MTCO1P19-201ENST00000443487 500 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 ELOCP30-201ENST00000447108 299 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 ELOCP24-201ENST00000456370 334 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 OR9P1P-201ENST00000496431 281 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AC093809.1-201ENST00000509155 340 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 SNRPGP1-201ENST00000553864 222 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 TPRKBP2-201ENST00000565969 475 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AL390208.1-201ENST00000605885 644 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 AC096586.1-201ENST00000610267 561 ntBASIC-0.61□□□□□ -2.51
LINC00643Q86TS7 RNU6-223P-201ENST00000362830 107 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 SNORD32B-201ENST00000364460 84 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 RNU6-438P-201ENST00000365561 103 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 MIR145-201ENST00000384967 88 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 RPS3AP36-201ENST00000398190 775 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 UBE2V1P11-201ENST00000411559 285 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 AC027644.1-201ENST00000419595 298 ntBASIC-0.62□□□□□ -2.51
LINC00643Q86TS7 AL606489.2-201ENST00000433886 234 ntBASIC-0.62□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms