Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC097463.2-201ENST00000421074 142 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RPL39P29-201ENST00000447779 157 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 MTND3P10-201ENST00000450967 341 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-1037P-201ENST00000459571 107 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC073901.1-201ENST00000462471 408 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC130509.1-201ENST00000464158 433 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RPL22P13-201ENST00000493291 347 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 HMGN1P12-201ENST00000499125 195 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC103851.1-201ENST00000506833 274 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU5B-3P-201ENST00000516601 115 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 RNU6-826P-201ENST00000516827 104 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 SNORA20.3-201ENST00000516880 132 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 SCARNA3-201ENST00000517097 143 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 MIR5571-201ENST00000577998 113 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC243960.4-201ENST00000600532 288 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AL049779.4-201ENST00000604500 156 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 ZNF658B-202ENST00000615961 3375 ntBASIC2.31□□□□□ -2.04
PDLIM3Q53GG5 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MIR26A1-201ENST00000362205 77 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.279-201ENST00000364763 95 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.301-201ENST00000364990 103 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 RNU6-95P-201ENST00000384697 107 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MIR592-201ENST00000384959 97 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MIR548F5-201ENST00000408421 86 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 UBE2V1P4-201ENST00000425374 344 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MRPL50P4-201ENST00000446432 475 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 AC011753.1-201ENST00000451001 220 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 SNORD109B-201ENST00000458961 67 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 SNORD109A-201ENST00000459128 67 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MTND4P17-201ENST00000470444 350 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 RPS29P21-201ENST00000496272 170 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 RNU6-566P-201ENST00000516790 107 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 RNA5SP454-201ENST00000517231 127 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 AC090897.2-201ENST00000581715 130 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 AP000787.2-201ENST00000604432 568 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 AC096772.1-201ENST00000609146 564 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MIR6128-201ENST00000615528 109 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 MTND4P23-201ENST00000447723 1363 ntBASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.184-201ENST00000363884 108 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 RNU6-128P-201ENST00000383976 107 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 RNU6-622P-201ENST00000384272 103 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.473-201ENST00000384333 102 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 Y_RNA.508-201ENST00000384502 114 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 RPL30P4-201ENST00000429309 333 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AC087499.2-201ENST00000432861 149 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 SNAP23P1-201ENST00000433229 246 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AC007969.2-201ENST00000441891 191 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 USP9YP8-201ENST00000441913 500 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 MTCO2P3-201ENST00000442543 421 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 MTND1P11-201ENST00000456661 876 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AC091874.1-201ENST00000511402 339 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 RNA5SP112-201ENST00000515937 99 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 RNU6-612P-201ENST00000516909 102 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AP005639.2-201ENST00000527592 928 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 HPRT1P3-201ENST00000539521 576 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 AC073410.2-201ENST00000603240 332 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 ZNF271P-202ENST00000465539 1970 ntBASIC2.29□□□□□ -2.04
PDLIM3Q53GG5 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 MTND4P12-201ENST00000498999 1377 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 SNORD81.2-201ENST00000365153 76 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 RNU6-1032P-201ENST00000384100 107 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 SNORA3.2-201ENST00000408221 125 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 RNU2-52P-201ENST00000410680 190 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 RNU6-1304P-201ENST00000411374 106 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AL030996.1-201ENST00000411430 235 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 PDCL2P1-201ENST00000419302 352 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AL031659.1-201ENST00000447075 539 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC013470.1-201ENST00000453438 462 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 PCMTD1P1-201ENST00000455560 355 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC080013.2-201ENST00000460866 323 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC090515.1-201ENST00000465295 476 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 RPS27P27-201ENST00000498779 255 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 SCGB1D5P-201ENST00000515134 247 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 RN7SKP24-201ENST00000515888 284 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC118273.2-201ENST00000532092 465 ntBASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.28□□□□□ -2.04
PDLIM3Q53GG5 AC069294.1-201ENST00000608397 350 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms