Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC109446.1-201ENST00000566172 220 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC090517.1-201ENST00000569307 266 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AP000860.1-201ENST00000605250 559 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC105129.3-201ENST00000605455 485 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AP000654.2-201ENST00000605633 586 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC099785.1-201ENST00000605697 437 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD3Q12873 MIR2909-201ENST00000617113 69 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AL512427.1-201ENST00000618593 349 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC103706.2-201ENST00000638080 240 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC073544.1-201ENST00000600110 1595 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 RNU6-1164P-201ENST00000364428 107 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 RNU6-43P-201ENST00000384302 107 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.55□□□□□ -2.32
CHD3Q12873 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD3Q12873 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD3Q12873 RNU6-64P-201ENST00000517119 105 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.55□□□□□ -2.32
CHD3Q12873 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 BNIP3P16-201ENST00000589779 534 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 SNRPGP20-201ENST00000604477 205 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 AC092106.3-201ENST00000611308 722 ntBASIC0.55□□□□□ -2.32
CHD3Q12873 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.55□□□□□ -2.32
CHD3Q12873 SNORA4.1-201ENST00000364263 144 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RNU6-910P-201ENST00000390844 107 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AL117342.1-201ENST00000404861 406 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD3Q12873 AC098934.3-201ENST00000430450 190 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.54□□□□□ -2.32
CHD3Q12873 AL163195.1-201ENST00000496941 348 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC079140.3-201ENST00000511111 550 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
CHD3Q12873 SNORA31.4-201ENST00000516049 129 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.54□□□□□ -2.32
CHD3Q12873 AL606834.3-201ENST00000602615 496 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AL136363.2-201ENST00000604173 851 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC090186.1-201ENST00000605991 572 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 MIR1248-201ENST00000629190 106 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 OR4G3P-201ENST00000633500 913 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC008163.1-202ENST00000636004 2889 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RNU1-96P-201ENST00000364163 162 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RNU4-56P-201ENST00000364700 142 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 MIR92A1-201ENST00000385233 78 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AL161935.2-201ENST00000414627 60 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD3Q12873 AL353777.1-201ENST00000425552 326 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.54□□□□□ -2.32
CHD3Q12873 AL008629.1-201ENST00000438615 184 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.54□□□□□ -2.32
CHD3Q12873 ART2BP-201ENST00000453501 499 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 MED28P2-201ENST00000475771 317 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 SUMO2P5-201ENST00000506790 245 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RNU6-150P-201ENST00000516237 95 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RNU5A-4P-201ENST00000516588 111 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 RN7SKP88-201ENST00000516847 250 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AP003122.4-201ENST00000530980 758 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 VN1R82P-201ENST00000601481 356 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AP002802.2-201ENST00000605877 235 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.54□□□□□ -2.32
CHD3Q12873 AC245297.2-201ENST00000610119 565 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 AC097478.2-201ENST00000610572 514 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 7SK.8-201ENST00000612110 250 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 7SK.11-201ENST00000615477 250 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 7SK.13-201ENST00000622040 250 ntBASIC0.54□□□□□ -2.32
CHD3Q12873 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.53□□□□□ -2.32
CHD3Q12873 Y_RNA.99-201ENST00000363138 105 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
CHD3Q12873 RNU6-723P-201ENST00000383973 107 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 MTCO1P21-201ENST00000416634 589 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.53□□□□□ -2.32
CHD3Q12873 AC134050.1-201ENST00000495088 933 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.53□□□□□ -2.32
CHD3Q12873 AC008945.2-201ENST00000606056 604 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 AC018926.1-201ENST00000616335 435 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.53□□□□□ -2.32
CHD3Q12873 MTND4P12-201ENST00000498999 1377 ntBASIC0.53□□□□□ -2.33
CHD3Q12873 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
CHD3Q12873 MIR302D-201ENST00000362275 68 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 AL356776.1-201ENST00000406574 447 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RN7SKP266-201ENST00000410232 287 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD3Q12873 AP000542.1-201ENST00000448473 371 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RPS20P10-201ENST00000451209 253 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 HMGN1P13-201ENST00000505795 138 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 Y_RNA.687-201ENST00000516558 91 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.52□□□□□ -2.33
CHD3Q12873 MIR3976-201ENST00000606807 139 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RNU6-1192P-201ENST00000612197 107 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AL512506.1-201ENST00000613918 449 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RNU6-489P-201ENST00000618289 107 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.52□□□□□ -2.33
CHD3Q12873 AC092104.1-201ENST00000497346 1441 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RNU6-23P-201ENST00000363283 107 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 FCF1P10-201ENST00000407590 479 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 RNU2-70P-201ENST00000410718 179 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AL590556.1-201ENST00000423231 483 ntBASIC0.52□□□□□ -2.33
CHD3Q12873 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC0.52□□□□□ -2.33
CHD3Q12873 AL669831.1-202ENST00000428504 417 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms