Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.62□□□□□ -1.83
YBX1P67809 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
YBX1P67809 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
YBX1P67809 Y_RNA.262-201ENST00000364641 102 ntBASIC3.62□□□□□ -1.83
YBX1P67809 Y_RNA.435-201ENST00000384095 112 ntBASIC3.62□□□□□ -1.83
YBX1P67809 AC092047.1-201ENST00000424997 240 ntBASIC3.62□□□□□ -1.83
YBX1P67809 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.62□□□□□ -1.83
YBX1P67809 AC016256.1-201ENST00000547971 354 ntBASIC3.62□□□□□ -1.83
YBX1P67809 HSPE1P4-201ENST00000550617 308 ntBASIC3.62□□□□□ -1.83
YBX1P67809 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.62□□□□□ -1.83
YBX1P67809 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.62□□□□□ -1.83
YBX1P67809 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
YBX1P67809 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
YBX1P67809 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
YBX1P67809 AC118273.1-201ENST00000525324 3006 ntBASIC3.62□□□□□ -1.83
YBX1P67809 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.62□□□□□ -1.83
YBX1P67809 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.61□□□□□ -1.83
YBX1P67809 ZNF204P-201ENST00000416749 2397 ntBASIC3.61□□□□□ -1.83
YBX1P67809 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
YBX1P67809 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.61□□□□□ -1.83
YBX1P67809 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
YBX1P67809 RNU6-137P-201ENST00000363680 108 ntBASIC3.61□□□□□ -1.83
YBX1P67809 MIR544A-201ENST00000384855 91 ntBASIC3.61□□□□□ -1.83
YBX1P67809 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
YBX1P67809 RPL23AP95-201ENST00000426806 265 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC010095.1-201ENST00000443543 144 ntBASIC3.61□□□□□ -1.83
YBX1P67809 MTATP6P7-201ENST00000453315 681 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.61□□□□□ -1.83
YBX1P67809 AL133162.1-201ENST00000463228 453 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC074133.1-201ENST00000515696 183 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
YBX1P67809 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.61□□□□□ -1.83
YBX1P67809 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.61□□□□□ -1.83
YBX1P67809 AC019159.1-201ENST00000605094 187 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AL356157.2-201ENST00000605122 111 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC096577.2-201ENST00000611455 153 ntBASIC3.61□□□□□ -1.83
YBX1P67809 AC068831.7-201ENST00000616954 363 ntBASIC3.61□□□□□ -1.83
YBX1P67809 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
YBX1P67809 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
YBX1P67809 AC073346.2-201ENST00000624724 2058 ntBASIC3.61□□□□□ -1.83
YBX1P67809 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
YBX1P67809 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.6□□□□□ -1.83
YBX1P67809 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
YBX1P67809 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
YBX1P67809 RNU4-56P-201ENST00000364700 142 ntBASIC3.6□□□□□ -1.83
YBX1P67809 RNU6-283P-201ENST00000364788 107 ntBASIC3.6□□□□□ -1.83
YBX1P67809 SNORA72.2-201ENST00000365028 127 ntBASIC3.6□□□□□ -1.83
YBX1P67809 SNORD116-18-201ENST00000383961 92 ntBASIC3.6□□□□□ -1.83
YBX1P67809 Y_RNA.441-201ENST00000384123 112 ntBASIC3.6□□□□□ -1.83
YBX1P67809 MIR34B-201ENST00000385076 84 ntBASIC3.6□□□□□ -1.83
YBX1P67809 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
YBX1P67809 RPL23AP48-201ENST00000406913 488 ntBASIC3.6□□□□□ -1.83
YBX1P67809 BMS1P22-201ENST00000414726 313 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AC074117.2-201ENST00000417130 397 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AL358075.3-201ENST00000426289 226 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.6□□□□□ -1.83
YBX1P67809 RPS29P31-201ENST00000446147 164 ntBASIC3.6□□□□□ -1.83
YBX1P67809 RPS4XP22-201ENST00000480755 780 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AC097462.2-201ENST00000504623 481 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.6□□□□□ -1.83
YBX1P67809 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.6□□□□□ -1.83
YBX1P67809 MIR4738-201ENST00000579134 87 ntBASIC3.6□□□□□ -1.83
YBX1P67809 FTX_3.1-201ENST00000610451 147 ntBASIC3.6□□□□□ -1.83
YBX1P67809 AC012314.7-201ENST00000619693 93 ntBASIC3.6□□□□□ -1.83
YBX1P67809 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.6□□□□□ -1.83
YBX1P67809 MAPK10-372ENST00000641954 3413 ntBASIC3.6□□□□□ -1.83
YBX1P67809 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.6□□□□□ -1.83
YBX1P67809 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
YBX1P67809 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
YBX1P67809 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
YBX1P67809 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.59□□□□□ -1.83
YBX1P67809 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
YBX1P67809 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.59□□□□□ -1.83
YBX1P67809 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.59□□□□□ -1.83
YBX1P67809 AC002546.1-201ENST00000588041 2504 ntBASIC3.59□□□□□ -1.83
YBX1P67809 Y_RNA.217-201ENST00000364214 105 ntBASIC3.59□□□□□ -1.83
YBX1P67809 SNORA36A-201ENST00000384221 132 ntBASIC3.59□□□□□ -1.83
YBX1P67809 U3.19-201ENST00000390893 196 ntBASIC3.59□□□□□ -1.83
YBX1P67809 RNU6-1197P-201ENST00000391183 107 ntBASIC3.59□□□□□ -1.83
YBX1P67809 NDUFB4P4-201ENST00000404822 243 ntBASIC3.59□□□□□ -1.83
YBX1P67809 Y_RNA.595-201ENST00000410403 105 ntBASIC3.59□□□□□ -1.83
YBX1P67809 RNU2-51P-201ENST00000410708 197 ntBASIC3.59□□□□□ -1.83
YBX1P67809 RHEBP3-201ENST00000411920 351 ntBASIC3.59□□□□□ -1.83
YBX1P67809 AC138623.1-201ENST00000418060 216 ntBASIC3.59□□□□□ -1.83
YBX1P67809 HMGN2P30-201ENST00000423237 256 ntBASIC3.59□□□□□ -1.83
YBX1P67809 OOSP1P1-201ENST00000423265 274 ntBASIC3.59□□□□□ -1.83
YBX1P67809 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.59□□□□□ -1.83
YBX1P67809 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.59□□□□□ -1.83
YBX1P67809 AL512844.2-201ENST00000433990 593 ntBASIC3.59□□□□□ -1.83
YBX1P67809 AC005042.3-201ENST00000453230 174 ntBASIC3.59□□□□□ -1.83
YBX1P67809 Y_RNA.641-201ENST00000459414 105 ntBASIC3.59□□□□□ -1.83
YBX1P67809 AC016632.1-201ENST00000503994 196 ntBASIC3.59□□□□□ -1.83
YBX1P67809 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.59□□□□□ -1.83
YBX1P67809 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.59□□□□□ -1.83
YBX1P67809 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.59□□□□□ -1.83
YBX1P67809 AC012531.5-201ENST00000611375 151 ntBASIC3.59□□□□□ -1.83
YBX1P67809 AL357075.2-201ENST00000614906 189 ntBASIC3.59□□□□□ -1.83
YBX1P67809 MTND1P7-201ENST00000632801 297 ntBASIC3.59□□□□□ -1.83
YBX1P67809 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms