Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Y_RNA.2-201ENST00000362330 96 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Y_RNA.80-201ENST00000362996 102 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Y_RNA.135-201ENST00000363439 95 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-702P-201ENST00000364982 107 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 Y_RNA.485-201ENST00000384395 102 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-1109P-201ENST00000391187 107 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL4A4P53420 AL023807.1-201ENST00000407932 359 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 MIR548F5-201ENST00000408421 86 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.96□□□□□ -2.1
COL4A4P53420 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.96□□□□□ -2.1
COL4A4P53420 RPL35AP22-201ENST00000436855 335 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 RPS4XP11-201ENST00000446897 772 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC005297.2-201ENST00000450430 606 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 RPS29P15-201ENST00000458329 171 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.96□□□□□ -2.1
COL4A4P53420 AC116562.3-201ENST00000506136 177 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-470P-201ENST00000515954 104 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNA5SP182-201ENST00000516064 82 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-256P-201ENST00000516747 97 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 RNU6-273P-201ENST00000516937 96 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 IGLV3-17-201ENST00000519099 244 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC022616.4-201ENST00000522985 181 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC011979.2-201ENST00000527568 352 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC068587.5-201ENST00000528506 175 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL4A4P53420 IMMP1LP2-201ENST00000552954 492 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC1.96□□□□□ -2.1
COL4A4P53420 AL356432.3-201ENST00000568952 465 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 OR4K8P-201ENST00000578842 1048 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC024619.4-201ENST00000580924 316 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC115085.1-201ENST00000588924 229 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 DUSP12P1-201ENST00000612874 516 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 HMGB1P24-202ENST00000615653 685 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 AC007485.1-201ENST00000616755 206 ntBASIC1.96□□□□□ -2.1
COL4A4P53420 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.96□□□□□ -2.1
COL4A4P53420 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
COL4A4P53420 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
COL4A4P53420 Y_RNA.152-201ENST00000363578 100 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 SNORA62.1-201ENST00000364287 154 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 Y_RNA.252-201ENST00000364556 101 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 Y_RNA.367-201ENST00000365544 101 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-1-201ENST00000383898 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-42P-201ENST00000384165 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-36P-201ENST00000384172 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-4P-201ENST00000384205 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-5P-201ENST00000384238 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-3P-201ENST00000384314 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-2-201ENST00000384627 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-9-201ENST00000384776 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-33P-201ENST00000384793 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 MIR1294-201ENST00000408503 142 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU2-20P-201ENST00000410425 191 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.95□□□□□ -2.1
COL4A4P53420 SKA2P1-201ENST00000425592 390 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 TRAPPC2P9-201ENST00000434556 343 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AL138799.3-201ENST00000438968 350 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RAC1P7-201ENST00000445367 377 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL4A4P53420 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC1.95□□□□□ -2.1
COL4A4P53420 AC104073.1-201ENST00000451988 151 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AL137159.1-201ENST00000452808 512 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 snoU13.8-201ENST00000458890 104 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 SNORD97-201ENST00000459187 142 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AC015911.1-201ENST00000495111 156 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL4A4P53420 AC093767.1-201ENST00000504523 156 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-408P-201ENST00000515910 100 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-699P-201ENST00000517081 110 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC1.95□□□□□ -2.1
COL4A4P53420 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.95□□□□□ -2.1
COL4A4P53420 LSM6P2-201ENST00000552208 177 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A4P53420 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.95□□□□□ -2.1
COL4A4P53420 MIR4703-201ENST00000577728 79 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 MIR4458-201ENST00000578872 75 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 MIR4452-201ENST00000583004 71 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AC113194.1-201ENST00000606037 500 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AL121992.2-201ENST00000606262 256 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 RNU6-6P-201ENST00000606623 107 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AP001486.3-201ENST00000615334 372 ntBASIC1.95□□□□□ -2.1
COL4A4P53420 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.95□□□□□ -2.1
COL4A4P53420 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A4P53420 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A4P53420 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A4P53420 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
COL4A4P53420 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
COL4A4P53420 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.95□□□□□ -2.1
COL4A4P53420 SNORD3E-201ENST00000362899 217 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 RNU6-960P-201ENST00000364056 120 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 RNU6-593P-201ENST00000364716 112 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
COL4A4P53420 RNU6-1040P-201ENST00000383974 107 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 Y_RNA.404-201ENST00000383978 102 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 RNU6-1226P-201ENST00000384317 107 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 RNU6-1026P-201ENST00000384465 108 ntBASIC1.94□□□□□ -2.1
COL4A4P53420 Y_RNA.576-201ENST00000384781 102 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms