Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.94□□□□□ -1.78
LIG3P49916 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.94□□□□□ -1.78
LIG3P49916 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.94□□□□□ -1.78
LIG3P49916 AL354798.1-201ENST00000622505 329 ntBASIC3.94□□□□□ -1.78
LIG3P49916 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LIG3P49916 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.94□□□□□ -1.78
LIG3P49916 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
LIG3P49916 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.93□□□□□ -1.78
LIG3P49916 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 Y_RNA.44-201ENST00000362676 108 ntBASIC3.93□□□□□ -1.78
LIG3P49916 Y_RNA.274-201ENST00000364714 101 ntBASIC3.93□□□□□ -1.78
LIG3P49916 Y_RNA.286-201ENST00000364813 102 ntBASIC3.93□□□□□ -1.78
LIG3P49916 Y_RNA.569-201ENST00000384749 103 ntBASIC3.93□□□□□ -1.78
LIG3P49916 MIR147B-201ENST00000390185 80 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AC096649.2-201ENST00000416186 393 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.93□□□□□ -1.78
LIG3P49916 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.93□□□□□ -1.78
LIG3P49916 SUMO1P3-201ENST00000439961 304 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AC010095.1-201ENST00000443543 144 ntBASIC3.93□□□□□ -1.78
LIG3P49916 HMGN2P7-201ENST00000456186 273 ntBASIC3.93□□□□□ -1.78
LIG3P49916 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.93□□□□□ -1.78
LIG3P49916 PRELID3BP1-201ENST00000457142 540 ntBASIC3.93□□□□□ -1.78
LIG3P49916 Y_RNA.683-201ENST00000516508 93 ntBASIC3.93□□□□□ -1.78
LIG3P49916 CYCSP23-201ENST00000519781 313 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.93□□□□□ -1.78
LIG3P49916 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.93□□□□□ -1.78
LIG3P49916 RPS15AP11-201ENST00000594193 385 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AC006111.3-201ENST00000622137 383 ntBASIC3.93□□□□□ -1.78
LIG3P49916 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
LIG3P49916 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.93□□□□□ -1.78
LIG3P49916 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 AC010889.1-201ENST00000566193 2666 ntBASIC3.93□□□□□ -1.78
LIG3P49916 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.93□□□□□ -1.78
LIG3P49916 AC010680.1-201ENST00000590024 3590 ntBASIC3.93□□□□□ -1.78
LIG3P49916 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.93□□□□□ -1.78
LIG3P49916 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LIG3P49916 ZNF204P-201ENST00000416749 2397 ntBASIC3.92□□□□□ -1.78
LIG3P49916 RNU6-961P-201ENST00000363893 105 ntBASIC3.92□□□□□ -1.78
LIG3P49916 RNA5SP97-201ENST00000365006 84 ntBASIC3.92□□□□□ -1.78
LIG3P49916 MIR208B-201ENST00000401172 77 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AP000567.1-201ENST00000406413 156 ntBASIC3.92□□□□□ -1.78
LIG3P49916 MIR1298-201ENST00000408783 112 ntBASIC3.92□□□□□ -1.78
LIG3P49916 RN7SKP202-201ENST00000410439 330 ntBASIC3.92□□□□□ -1.78
LIG3P49916 SNORA57.3-201ENST00000411095 141 ntBASIC3.92□□□□□ -1.78
LIG3P49916 CYCSP19-201ENST00000411715 316 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC017079.2-201ENST00000416102 485 ntBASIC3.92□□□□□ -1.78
LIG3P49916 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.92□□□□□ -1.78
LIG3P49916 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.92□□□□□ -1.78
LIG3P49916 AC007395.1-201ENST00000451333 677 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AL138752.1-201ENST00000452964 351 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC007215.1-201ENST00000464893 276 ntBASIC3.92□□□□□ -1.78
LIG3P49916 RN7SL330P-201ENST00000469709 307 ntBASIC3.92□□□□□ -1.78
LIG3P49916 TRBV12-2-201ENST00000489763 344 ntBASIC3.92□□□□□ -1.78
LIG3P49916 RN7SL323P-201ENST00000494712 295 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.92□□□□□ -1.78
LIG3P49916 SNORA25.14-201ENST00000516481 132 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.92□□□□□ -1.78
LIG3P49916 AC034105.4-201ENST00000568304 277 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.92□□□□□ -1.78
LIG3P49916 AC006130.2-201ENST00000586202 326 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC005176.2-201ENST00000596933 147 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AL356575.1-201ENST00000603008 283 ntBASIC3.92□□□□□ -1.78
LIG3P49916 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.92□□□□□ -1.78
LIG3P49916 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.92□□□□□ -1.78
LIG3P49916 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.91□□□□□ -1.78
LIG3P49916 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.91□□□□□ -1.78
LIG3P49916 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LIG3P49916 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.91□□□□□ -1.78
LIG3P49916 SNORA25.1-201ENST00000362326 128 ntBASIC3.91□□□□□ -1.78
LIG3P49916 RNU6-1175P-201ENST00000365200 107 ntBASIC3.91□□□□□ -1.78
LIG3P49916 RNU6-1062P-201ENST00000383908 107 ntBASIC3.91□□□□□ -1.78
LIG3P49916 RNU6-245P-201ENST00000384020 107 ntBASIC3.91□□□□□ -1.78
LIG3P49916 RNU6-514P-201ENST00000384208 107 ntBASIC3.91□□□□□ -1.78
LIG3P49916 Y_RNA.555-201ENST00000384673 110 ntBASIC3.91□□□□□ -1.78
LIG3P49916 MIR30B-201ENST00000384850 88 ntBASIC3.91□□□□□ -1.78
LIG3P49916 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
LIG3P49916 AL133475.1-201ENST00000404414 305 ntBASIC3.91□□□□□ -1.78
LIG3P49916 MIR320B2-201ENST00000408479 138 ntBASIC3.91□□□□□ -1.78
LIG3P49916 AL139156.1-201ENST00000412785 841 ntBASIC3.91□□□□□ -1.78
LIG3P49916 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.91□□□□□ -1.78
LIG3P49916 RNU5F-2P-201ENST00000516066 82 ntBASIC3.91□□□□□ -1.78
LIG3P49916 CYCSP30-201ENST00000546447 172 ntBASIC3.91□□□□□ -1.78
LIG3P49916 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.91□□□□□ -1.78
LIG3P49916 AL162713.1-201ENST00000604480 262 ntBASIC3.91□□□□□ -1.78
LIG3P49916 AL365434.2-201ENST00000607979 234 ntBASIC3.91□□□□□ -1.78
LIG3P49916 AF127577.6-201ENST00000623352 2191 ntBASIC3.91□□□□□ -1.78
LIG3P49916 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.91□□□□□ -1.78
LIG3P49916 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
LIG3P49916 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.78
LIG3P49916 BX322639.1-202ENST00000423987 2213 ntBASIC3.9□□□□□ -1.78
LIG3P49916 RNU6-1010P-201ENST00000362757 107 ntBASIC3.9□□□□□ -1.79
LIG3P49916 Y_RNA.179-201ENST00000363844 90 ntBASIC3.9□□□□□ -1.79
LIG3P49916 U1.1-201ENST00000384101 164 ntBASIC3.9□□□□□ -1.79
LIG3P49916 RNU6-750P-201ENST00000390946 107 ntBASIC3.9□□□□□ -1.79
LIG3P49916 U3.26-201ENST00000391236 204 ntBASIC3.9□□□□□ -1.79
LIG3P49916 SNORA11-201ENST00000408789 128 ntBASIC3.9□□□□□ -1.79
LIG3P49916 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms