Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FRG2DP-202ENST00000566967 323 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.73□□□□□ -1.97
PTPN9P43378 AC011494.1-201ENST00000596454 237 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 RPL12P50-201ENST00000603116 116 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 AP000654.2-201ENST00000605633 586 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.73□□□□□ -1.97
PTPN9P43378 MIR7157-201ENST00000635801 60 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
PTPN9P43378 KPNA2P1-201ENST00000458289 1591 ntBASIC2.73□□□□□ -1.97
PTPN9P43378 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
PTPN9P43378 RNU6-1285P-201ENST00000363480 105 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 RNU6-43P-201ENST00000384302 107 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 RNU6-306P-201ENST00000384617 107 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 MIR544A-201ENST00000384855 91 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
PTPN9P43378 Y_RNA.594-201ENST00000410373 140 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 RNU6-1050P-201ENST00000410388 107 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 RNU6-370P-201ENST00000411008 104 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 EIF1AXP1-201ENST00000419267 435 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 USP9YP30-201ENST00000430729 455 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 UBBP3-201ENST00000445497 241 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 Y_RNA.632-201ENST00000459189 102 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 SNORD19B-201ENST00000459623 84 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 RPL36AP48-201ENST00000485521 314 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.72□□□□□ -1.97
PTPN9P43378 Y_RNA.675-201ENST00000516389 149 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 ELOCP31-201ENST00000540463 467 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 AL359757.2-201ENST00000624309 274 ntBASIC2.72□□□□□ -1.97
PTPN9P43378 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
PTPN9P43378 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.71□□□□□ -1.98
PTPN9P43378 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.71□□□□□ -1.98
PTPN9P43378 RNU6-486P-201ENST00000363116 107 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 Y_RNA.431-201ENST00000384086 102 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 Y_RNA.535-201ENST00000384612 99 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 MIR521-1-201ENST00000384902 87 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 SNORA26.3-201ENST00000391119 136 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 MTCO2P27-201ENST00000420740 428 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 AC063976.3-201ENST00000426849 329 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.71□□□□□ -1.98
PTPN9P43378 AL031659.1-201ENST00000447075 539 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 FTH1P25-201ENST00000447665 469 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 RPL39P29-201ENST00000447779 157 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 RNU7-152P-201ENST00000458982 64 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.71□□□□□ -1.98
PTPN9P43378 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.71□□□□□ -1.98
PTPN9P43378 RNA5SP356-201ENST00000515972 94 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 APOOP3-201ENST00000536787 586 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.71□□□□□ -1.98
PTPN9P43378 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.71□□□□□ -1.98
PTPN9P43378 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.71□□□□□ -1.98
PTPN9P43378 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.71□□□□□ -1.98
PTPN9P43378 AC005899.2-201ENST00000584353 90 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 MIR4765-201ENST00000585007 77 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 MIR3976-201ENST00000606807 139 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 AC133104.2-201ENST00000615272 193 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 PISRT1.1-201ENST00000616930 107 ntBASIC2.71□□□□□ -1.98
PTPN9P43378 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.71□□□□□ -1.98
PTPN9P43378 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
PTPN9P43378 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTPN9P43378 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTPN9P43378 AC092268.1-201ENST00000342691 405 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AC062016.1-201ENST00000355719 319 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
PTPN9P43378 Y_RNA.67-201ENST00000362870 100 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNU6-529P-201ENST00000363383 104 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 MIR634-201ENST00000385208 97 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNA5SP210-201ENST00000391034 120 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNY4P36-201ENST00000391116 96 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 SNORA75.4-201ENST00000391278 119 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 FO393413.1-201ENST00000402892 195 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNU2-52P-201ENST00000410680 190 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AC138623.1-201ENST00000418060 216 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AC097463.2-201ENST00000421074 142 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 MTND3P9-201ENST00000429526 346 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.7□□□□□ -1.98
PTPN9P43378 Y_RNA.670-201ENST00000516255 105 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNU6-307P-201ENST00000516743 106 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 SNORA31.15-201ENST00000516771 132 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 Y_RNA.718-201ENST00000517110 102 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.7□□□□□ -1.98
PTPN9P43378 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.7□□□□□ -1.98
PTPN9P43378 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.7□□□□□ -1.98
PTPN9P43378 MIR4446-201ENST00000578505 67 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.7□□□□□ -1.98
PTPN9P43378 MIR5092-201ENST00000583139 88 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AL137843.1-201ENST00000605078 385 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 FO624990.1-201ENST00000636373 85 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 AL669831.3-213ENST00000636676 183 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 MIR7515-201ENST00000637837 67 ntBASIC2.7□□□□□ -1.98
PTPN9P43378 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTPN9P43378 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
PTPN9P43378 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.69□□□□□ -1.98
PTPN9P43378 SNORA5B-201ENST00000363786 132 ntBASIC2.69□□□□□ -1.98
PTPN9P43378 Y_RNA.315-201ENST00000365117 102 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms