Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC010153.1-201ENST00000432862 727 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC-0.12□□□□□ -2.43
CUX1P39880 snoU13.30-201ENST00000458951 104 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 RNA5SP227-201ENST00000516184 113 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 RNU6-1183P-201ENST00000517054 60 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 RNU6-889P-201ENST00000517189 103 ntBASIC-0.12□□□□□ -2.43
CUX1P39880 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC-0.12□□□□□ -2.43
CUX1P39880 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC-0.12□□□□□ -2.43
CUX1P39880 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 SNORD114-28-201ENST00000363610 72 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 U8.7-201ENST00000364940 136 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 RPL22P18-201ENST00000417197 377 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC-0.13□□□□□ -2.43
CUX1P39880 MTCYBP1-201ENST00000454315 1119 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 AL162395.1-201ENST00000457882 422 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC-0.13□□□□□ -2.43
CUX1P39880 LARP7P2-201ENST00000575306 125 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 AC126365.2-201ENST00000580630 379 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 AL451064.1-201ENST00000607718 471 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 U6.99-201ENST00000637524 83 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 MTND5P16-201ENST00000460269 1703 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.13□□□□□ -2.43
CUX1P39880 SNORD118-201ENST00000363593 134 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 RNU6-302P-201ENST00000365249 107 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 RNU6-1335P-201ENST00000365426 107 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.13□□□□□ -2.43
CUX1P39880 MTND2P5-201ENST00000432656 1006 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 HMGN2P34-201ENST00000437647 269 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 snoU13.27-201ENST00000459278 104 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC-0.13□□□□□ -2.43
CUX1P39880 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC-0.13□□□□□ -2.43
CUX1P39880 AC090502.2-201ENST00000549267 280 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 RNU6ATAC35P-201ENST00000609276 444 ntBASIC-0.13□□□□□ -2.43
CUX1P39880 RNU6-1010P-201ENST00000362757 107 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 RNA5SP214-201ENST00000363378 118 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 SNORD114-9-201ENST00000364370 72 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 SNORA36.2-201ENST00000384004 127 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 MIR186-201ENST00000384988 86 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 RNU6-754P-201ENST00000391166 107 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 RNA5SP451-201ENST00000410588 110 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 GPM6BP2-201ENST00000432046 144 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 GPM6BP1-201ENST00000446387 144 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC-0.14□□□□□ -2.43
CUX1P39880 RPL39P38-201ENST00000467018 153 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC-0.14□□□□□ -2.43
CUX1P39880 RNU6-416P-201ENST00000516265 103 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 AC093012.1-202ENST00000549403 582 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 VN1R83P-201ENST00000595685 445 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 AC098483.2-201ENST00000603158 454 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 AL031281.1-201ENST00000604049 488 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC-0.14□□□□□ -2.43
CUX1P39880 AC119674.1-220ENST00000641502 1048 ntBASIC-0.14□□□□□ -2.43
CUX1P39880 CASC19-280ENST00000642102 1351 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 SNORA63D-201ENST00000364359 132 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 RNU6-163P-201ENST00000384396 106 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 CBX3P9-201ENST00000402326 552 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AL008629.1-201ENST00000438615 184 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AC005094.1-201ENST00000440420 368 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-0.15□□□□□ -2.43
CUX1P39880 RNU7-90P-201ENST00000459216 62 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC-0.15□□□□□ -2.43
CUX1P39880 AC024589.1-201ENST00000512207 263 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 RNU6-390P-201ENST00000516259 103 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC-0.15□□□□□ -2.43
CUX1P39880 AC095057.3-201ENST00000567102 1157 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 AC242628.1-201ENST00000606810 391 ntBASIC-0.15□□□□□ -2.43
CUX1P39880 MIR103A1-201ENST00000362165 78 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 RNU6-514P-201ENST00000384208 107 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 RNA5SP219-201ENST00000390940 113 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC-0.16□□□□□ -2.43
CUX1P39880 BNIP3P24-201ENST00000593398 557 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 AP001981.2-201ENST00000603241 418 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 AC013244.3-201ENST00000605614 388 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 RNU4-5P-201ENST00000607255 135 ntBASIC-0.16□□□□□ -2.43
CUX1P39880 RNU6-1167P-201ENST00000363227 94 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 RNU6-654P-201ENST00000364373 107 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 Y_RNA.332-201ENST00000365271 113 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 COX6CP10-201ENST00000416832 224 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC-0.17□□□□□ -2.44
CUX1P39880 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.17□□□□□ -2.44
CUX1P39880 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC-0.17□□□□□ -2.44
CUX1P39880 AC023194.1-201ENST00000493084 308 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 RNU6-927P-201ENST00000516199 100 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 AC022861.1-201ENST00000522981 663 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 AC016256.1-201ENST00000547971 354 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.17□□□□□ -2.44
CUX1P39880 AL132657.2-201ENST00000564417 358 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 AL513534.2-201ENST00000603836 250 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 AC093788.1-201ENST00000609356 927 ntBASIC-0.17□□□□□ -2.44
CUX1P39880 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC-0.17□□□□□ -2.44
CUX1P39880 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 MIR29B2-201ENST00000385055 81 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 MIR938-201ENST00000401216 83 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 RNA5SP222-201ENST00000411039 105 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 MTCO3P1-205ENST00000422088 832 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AC011233.1-201ENST00000422812 283 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 ISCA1P1-201ENST00000426679 387 ntBASIC-0.18□□□□□ -2.44
CUX1P39880 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC-0.18□□□□□ -2.44
CUX1P39880 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms