Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.12□□□□□ -2.23
COL18A1P39060 AC022880.1-201ENST00000534017 973 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC1.12□□□□□ -2.23
COL18A1P39060 AC137800.2-201ENST00000574375 120 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AP000811.1-201ENST00000603803 651 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AP000240.1-201ENST00000609910 452 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC1.12□□□□□ -2.23
COL18A1P39060 AC006927.3-201ENST00000638789 384 ntBASIC1.12□□□□□ -2.23
COL18A1P39060 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
COL18A1P39060 RNY1P12-201ENST00000364251 105 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-17P-201ENST00000384245 107 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-18P-201ENST00000384527 107 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-925P-201ENST00000384629 104 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 SSR1P2-201ENST00000415208 787 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL590365.1-201ENST00000450788 243 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RPL31P58-201ENST00000469001 379 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 MTND2P33-201ENST00000506452 1031 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 MTCYBP40-201ENST00000509390 1135 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 FAM206BP-201ENST00000510179 541 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 AC010900.2-201ENST00000604508 210 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.11□□□□□ -2.23
COL18A1P39060 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-212P-201ENST00000362642 104 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-944P-201ENST00000364023 107 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-501P-201ENST00000364072 100 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-1274P-201ENST00000384557 107 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-584P-201ENST00000410350 95 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 Y_RNA.597-201ENST00000410463 100 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNU2-8P-201ENST00000410727 190 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL008987.1-201ENST00000415528 237 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL354692.1-201ENST00000423044 315 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL590556.1-201ENST00000423231 483 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL589872.1-201ENST00000426602 288 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL591043.1-201ENST00000432461 424 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 RNU6-311P-201ENST00000516224 102 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 RNA5SP121-201ENST00000516537 101 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 Y_RNA.687-201ENST00000516558 91 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.11□□□□□ -2.23
COL18A1P39060 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.11□□□□□ -2.23
COL18A1P39060 ELOCP32-201ENST00000548625 324 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 DEFB131E-202ENST00000602581 683 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC105129.3-201ENST00000605455 485 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC012409.4-201ENST00000612923 249 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AC027807.2-201ENST00000616099 408 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 AL109933.3-201ENST00000619095 188 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.11□□□□□ -2.23
COL18A1P39060 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.11□□□□□ -2.23
COL18A1P39060 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
COL18A1P39060 snoU2_19.1-201ENST00000362361 80 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 SNORD56.1-201ENST00000362913 68 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 RNU6-660P-201ENST00000364566 109 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 RNU6-533P-201ENST00000384144 107 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 BTF3L4P2-201ENST00000392798 346 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 RPS3AP36-201ENST00000398190 775 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AC009310.1-201ENST00000414414 451 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.1□□□□□ -2.23
COL18A1P39060 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.1□□□□□ -2.23
COL18A1P39060 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.1□□□□□ -2.23
COL18A1P39060 AL353752.1-201ENST00000454946 260 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.1□□□□□ -2.23
COL18A1P39060 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.1□□□□□ -2.23
COL18A1P39060 RNU6-965P-201ENST00000516721 96 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AP003461.1-201ENST00000528866 78 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 ZNF519P3-201ENST00000557158 1032 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.1□□□□□ -2.23
COL18A1P39060 AC018714.1-201ENST00000605028 208 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.1□□□□□ -2.23
COL18A1P39060 Z82243.1-201ENST00000609432 473 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.1□□□□□ -2.23
COL18A1P39060 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AC026585.1-201ENST00000619582 524 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 RMST_7.1-201ENST00000621935 268 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 AC008993.2-201ENST00000631744 806 ntBASIC1.1□□□□□ -2.23
COL18A1P39060 Y_RNA.99-201ENST00000363138 105 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 SNORD113-6-201ENST00000363345 75 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 RNU6-527P-201ENST00000363425 104 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 MIR558-201ENST00000384920 94 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
COL18A1P39060 Y_RNA.608-201ENST00000410647 95 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 RNU6-387P-201ENST00000411331 105 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 OR9R1P-201ENST00000412200 877 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 AL365184.2-201ENST00000431139 435 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.09□□□□□ -2.23
COL18A1P39060 AC093259.1-201ENST00000509755 300 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 RNU6-123P-201ENST00000516163 102 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.09□□□□□ -2.23
COL18A1P39060 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC1.09□□□□□ -2.23
COL18A1P39060 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.09□□□□□ -2.23
COL18A1P39060 MTCYBP33-201ENST00000575007 1130 ntBASIC1.09□□□□□ -2.23
COL18A1P39060 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms