Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 U2.19-201ENST00000618602 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU2-1-201ENST00000618664 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.6-201ENST00000619225 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.5-201ENST00000619465 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 U2.10-201ENST00000620268 191 ntBASIC1.87□□□□□ -2.11
SDC1P18827 DUXAP9-208ENST00000622815 614 ntBASIC1.87□□□□□ -2.11
SDC1P18827 MIR219B-201ENST00000637023 88 ntBASIC1.87□□□□□ -2.11
SDC1P18827 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
SDC1P18827 OR4G1P-203ENST00000641984 1631 ntBASIC1.87□□□□□ -2.11
SDC1P18827 RNU6-1090P-201ENST00000364065 94 ntBASIC1.86□□□□□ -2.11
SDC1P18827 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
SDC1P18827 AL590002.1-201ENST00000406554 418 ntBASIC1.86□□□□□ -2.11
SDC1P18827 SNORA3.2-201ENST00000408221 125 ntBASIC1.86□□□□□ -2.11
SDC1P18827 RN7SKP223-201ENST00000410582 62 ntBASIC1.86□□□□□ -2.11
SDC1P18827 EDDM3CP-201ENST00000415977 425 ntBASIC1.86□□□□□ -2.11
SDC1P18827 C8orf59P1-201ENST00000429930 303 ntBASIC1.86□□□□□ -2.11
SDC1P18827 AL445646.1-201ENST00000431784 216 ntBASIC1.86□□□□□ -2.11
SDC1P18827 RPS15AP10-201ENST00000432472 382 ntBASIC1.86□□□□□ -2.11
SDC1P18827 MTND3P21-201ENST00000433774 331 ntBASIC1.86□□□□□ -2.11
SDC1P18827 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
SDC1P18827 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.86□□□□□ -2.11
SDC1P18827 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.86□□□□□ -2.11
SDC1P18827 RPL38P4-201ENST00000502376 214 ntBASIC1.86□□□□□ -2.11
SDC1P18827 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.86□□□□□ -2.11
SDC1P18827 RPL39P5-202ENST00000512505 151 ntBASIC1.86□□□□□ -2.11
SDC1P18827 SNORA19.2-201ENST00000516013 114 ntBASIC1.86□□□□□ -2.11
SDC1P18827 AC016957.1-201ENST00000534895 309 ntBASIC1.86□□□□□ -2.11
SDC1P18827 AP000763.2-201ENST00000540641 163 ntBASIC1.86□□□□□ -2.11
SDC1P18827 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.86□□□□□ -2.11
SDC1P18827 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC1.86□□□□□ -2.11
SDC1P18827 MIR5692C1-201ENST00000585309 91 ntBASIC1.86□□□□□ -2.11
SDC1P18827 RNU6-89P-201ENST00000606519 100 ntBASIC1.86□□□□□ -2.11
SDC1P18827 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.86□□□□□ -2.11
SDC1P18827 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
SDC1P18827 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
SDC1P18827 Y_RNA.38-201ENST00000362617 102 ntBASIC1.85□□□□□ -2.11
SDC1P18827 RNU6-1141P-201ENST00000364520 107 ntBASIC1.85□□□□□ -2.11
SDC1P18827 MIR29B2-201ENST00000385055 81 ntBASIC1.85□□□□□ -2.11
SDC1P18827 RNU2-32P-201ENST00000411193 191 ntBASIC1.85□□□□□ -2.11
SDC1P18827 USP9YP18-201ENST00000425912 695 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC1P18827 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.85□□□□□ -2.11
SDC1P18827 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.85□□□□□ -2.11
SDC1P18827 AC091874.1-201ENST00000511402 339 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC008549.1-201ENST00000512900 643 ntBASIC1.85□□□□□ -2.11
SDC1P18827 MIR514B-201ENST00000516774 80 ntBASIC1.85□□□□□ -2.11
SDC1P18827 SNORD60.2-201ENST00000516883 86 ntBASIC1.85□□□□□ -2.11
SDC1P18827 RNU6-667P-201ENST00000517186 102 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC1P18827 RNU6-323P-201ENST00000521915 107 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC115990.1-201ENST00000526957 301 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC1P18827 AC025423.5-201ENST00000550230 219 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.85□□□□□ -2.11
SDC1P18827 TPRKBP2-201ENST00000565969 475 ntBASIC1.85□□□□□ -2.11
SDC1P18827 MIR3126-201ENST00000577443 74 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC1P18827 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.85□□□□□ -2.11
SDC1P18827 AC010525.2-201ENST00000590920 195 ntBASIC1.85□□□□□ -2.11
SDC1P18827 BNIP3P25-201ENST00000596023 559 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.85□□□□□ -2.11
SDC1P18827 AP001836.1-201ENST00000604675 523 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AL034555.1-201ENST00000604816 211 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC012557.2-201ENST00000605919 418 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AL357078.3-201ENST00000607528 618 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC064836.2-201ENST00000609491 462 ntBASIC1.85□□□□□ -2.11
SDC1P18827 AC063943.3-201ENST00000615562 356 ntBASIC1.85□□□□□ -2.11
SDC1P18827 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.85□□□□□ -2.11
SDC1P18827 FER-210ENST00000628534 558 ntTSL 5 BASIC1.85□□□□□ -2.11
SDC1P18827 SNORD98-201ENST00000636377 67 ntBASIC1.85□□□□□ -2.11
SDC1P18827 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.85□□□□□ -2.11
SDC1P18827 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
SDC1P18827 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SDC1P18827 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.84□□□□□ -2.11
SDC1P18827 RNU6-451P-201ENST00000362921 107 ntBASIC1.84□□□□□ -2.11
SDC1P18827 Y_RNA.554-201ENST00000384672 102 ntBASIC1.84□□□□□ -2.11
SDC1P18827 SUMO2P12-201ENST00000405924 140 ntBASIC1.84□□□□□ -2.11
SDC1P18827 RNA5SP425-201ENST00000410336 112 ntBASIC1.84□□□□□ -2.11
SDC1P18827 RNA5SP270-201ENST00000411361 118 ntBASIC1.84□□□□□ -2.11
SDC1P18827 RPL23AP95-201ENST00000426806 265 ntBASIC1.84□□□□□ -2.11
SDC1P18827 ERLEC1P1-201ENST00000433806 578 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.84□□□□□ -2.11
SDC1P18827 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC1P18827 MTCO2P3-201ENST00000442543 421 ntBASIC1.84□□□□□ -2.11
SDC1P18827 UBE2DNL-203ENST00000474922 222 ntBASIC1.84□□□□□ -2.11
SDC1P18827 HMGB1P35-201ENST00000503360 598 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.84□□□□□ -2.11
SDC1P18827 Y_RNA.655-201ENST00000515919 96 ntBASIC1.84□□□□□ -2.11
SDC1P18827 SNORA31.16-201ENST00000516773 139 ntBASIC1.84□□□□□ -2.11
SDC1P18827 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC087854.1-201ENST00000519706 414 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC104576.1-201ENST00000524225 88 ntBASIC1.84□□□□□ -2.11
SDC1P18827 NDUFA5P6-201ENST00000542110 379 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC018630.3-201ENST00000542637 96 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AP002770.2-201ENST00000543613 532 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AL157687.1-201ENST00000554853 619 ntBASIC1.84□□□□□ -2.11
SDC1P18827 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC1P18827 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.84□□□□□ -2.11
SDC1P18827 AC018889.1-201ENST00000605372 397 ntBASIC1.84□□□□□ -2.11
SDC1P18827 AC068944.2-201ENST00000610373 403 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 162.6 ms