Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RAP1BP3-201ENST00000407180 549 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 MIR548F5-201ENST00000408421 86 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 SNORD56-201ENST00000413522 71 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC003685.2-201ENST00000422795 395 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 BX276092.3-201ENST00000424182 230 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AL445687.1-201ENST00000439946 251 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 HIGD1AP2-201ENST00000446367 280 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXD4P09016 AC090096.1-201ENST00000489168 390 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC092436.3-201ENST00000511788 257 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 RNU6-581P-201ENST00000516214 105 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 RNA5SP454-201ENST00000517231 127 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC104576.1-201ENST00000524225 88 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.2□□□□□ -2.06
HOXD4P09016 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXD4P09016 AC021739.1-201ENST00000559631 174 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC007151.1-201ENST00000572774 483 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 MIR4790-201ENST00000577799 79 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXD4P09016 AC064836.2-201ENST00000609491 462 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXD4P09016 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXD4P09016 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXD4P09016 MIR3199-2-201ENST00000636243 86 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 AC099654.5-201ENST00000636479 350 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 CDC27P3-201ENST00000635418 1910 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXD4P09016 ADAM3A-203ENST00000461344 2157 ntBASIC2.2□□□□□ -2.06
HOXD4P09016 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HOXD4P09016 ZNF720P1-201ENST00000562403 1939 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD4P09016 RNU6-562P-201ENST00000362731 107 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 RNU6-1329P-201ENST00000365664 107 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD4P09016 RNU6-214P-201ENST00000384130 107 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 Y_RNA.474-201ENST00000384341 102 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 SNORA41-201ENST00000384675 132 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 MIR548K-201ENST00000408406 116 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 RN7SKP223-201ENST00000410582 62 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC007064.1-201ENST00000412238 351 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXD4P09016 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.19□□□□□ -2.06
HOXD4P09016 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.19□□□□□ -2.06
HOXD4P09016 DPH3P2-201ENST00000422618 250 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXD4P09016 MTND1P17-201ENST00000448961 204 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AL031274.1-201ENST00000450334 232 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD4P09016 AC092001.1-201ENST00000453012 261 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 Y_RNA.638-201ENST00000459374 113 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC234781.5-201ENST00000508429 271 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 MTND3P22-201ENST00000510932 243 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 SCARNA17.1-201ENST00000516211 143 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 RNU6-277P-201ENST00000516272 106 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 SCARNA17.2-201ENST00000516334 143 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD4P09016 AP004607.1-201ENST00000524456 203 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC006199.1-201ENST00000548728 219 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC026371.1-201ENST00000551867 419 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD4P09016 AC100830.2-201ENST00000581636 240 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 MIR3117-201ENST00000584034 78 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD4P09016 AL391813.1-201ENST00000603098 260 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AL356280.1-201ENST00000603614 379 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AL121917.1-203ENST00000605534 577 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 MIR6840-201ENST00000611937 71 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 SCARNA17.4-201ENST00000614296 143 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXD4P09016 SCARNA4-202ENST00000625402 129 ntBASIC2.19□□□□□ -2.06
HOXD4P09016 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXD4P09016 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD4P09016 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
HOXD4P09016 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXD4P09016 RNU6-78P-201ENST00000362897 107 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 RNU6-942P-201ENST00000363002 107 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 RNU6-797P-201ENST00000363101 109 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 Y_RNA.339-201ENST00000365325 102 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 RNU6-95P-201ENST00000384697 107 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 MT-TD-201ENST00000387419 68 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AL117339.3-201ENST00000418733 162 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD4P09016 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD4P09016 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXD4P09016 AC130509.1-201ENST00000464158 433 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXD4P09016 MTCO1P29-201ENST00000496868 288 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 MTND5P5-201ENST00000503764 376 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 FGF7P4-201ENST00000509595 295 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXD4P09016 AC093027.1-201ENST00000546698 429 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AL121821.2-201ENST00000556081 394 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXD4P09016 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.18□□□□□ -2.06
HOXD4P09016 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXD4P09016 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXD4P09016 C8orf59P2-201ENST00000603441 271 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AC009233.1-201ENST00000616477 371 ntBASIC2.18□□□□□ -2.06
HOXD4P09016 AL449363.1-201ENST00000617815 186 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 157.9 ms