Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC064836.2-201ENST00000609491 462 ntBASIC2.16□□□□□ -2.06
VIMP08670 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
VIMP08670 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.16□□□□□ -2.06
VIMP08670 OR4G1P-203ENST00000641984 1631 ntBASIC2.16□□□□□ -2.06
VIMP08670 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
VIMP08670 Y_RNA.333-201ENST00000365274 102 ntBASIC2.15□□□□□ -2.07
VIMP08670 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VIMP08670 RNU6-611P-201ENST00000384276 104 ntBASIC2.15□□□□□ -2.07
VIMP08670 HMGN2P39-201ENST00000398005 273 ntBASIC2.15□□□□□ -2.07
VIMP08670 RNU6-908P-201ENST00000410160 94 ntBASIC2.15□□□□□ -2.07
VIMP08670 RN7SKP61-201ENST00000410642 295 ntBASIC2.15□□□□□ -2.07
VIMP08670 RPL23AP95-201ENST00000426806 265 ntBASIC2.15□□□□□ -2.07
VIMP08670 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.15□□□□□ -2.07
VIMP08670 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.15□□□□□ -2.07
VIMP08670 AC055731.1-201ENST00000474387 401 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC145146.1-201ENST00000496370 254 ntBASIC2.15□□□□□ -2.07
VIMP08670 RPL38P4-201ENST00000502376 214 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.15□□□□□ -2.07
VIMP08670 AC104576.1-201ENST00000524225 88 ntBASIC2.15□□□□□ -2.07
VIMP08670 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.15□□□□□ -2.07
VIMP08670 MIR4319-201ENST00000577285 85 ntBASIC2.15□□□□□ -2.07
VIMP08670 MIR3136-201ENST00000583498 78 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC010525.2-201ENST00000590920 195 ntBASIC2.15□□□□□ -2.07
VIMP08670 AL109918.3-201ENST00000603072 338 ntBASIC2.15□□□□□ -2.07
VIMP08670 SNRPGP17-201ENST00000603780 214 ntBASIC2.15□□□□□ -2.07
VIMP08670 AL356157.2-201ENST00000605122 111 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC005000.2-201ENST00000605468 310 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC068944.2-201ENST00000610373 403 ntBASIC2.15□□□□□ -2.07
VIMP08670 MIR6817-201ENST00000615588 66 ntBASIC2.15□□□□□ -2.07
VIMP08670 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC006386.2-201ENST00000624491 75 ntBASIC2.15□□□□□ -2.07
VIMP08670 AC012005.1-201ENST00000624575 75 ntBASIC2.15□□□□□ -2.07
VIMP08670 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
VIMP08670 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
VIMP08670 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
VIMP08670 AC062016.1-201ENST00000355719 319 ntBASIC2.14□□□□□ -2.07
VIMP08670 SNORA5B-201ENST00000363786 132 ntBASIC2.14□□□□□ -2.07
VIMP08670 RNU6-743P-201ENST00000364151 106 ntBASIC2.14□□□□□ -2.07
VIMP08670 RNU6-142P-201ENST00000384019 107 ntBASIC2.14□□□□□ -2.07
VIMP08670 SNORA12-201ENST00000391162 147 ntBASIC2.14□□□□□ -2.07
VIMP08670 SNORA11.1-201ENST00000408133 129 ntBASIC2.14□□□□□ -2.07
VIMP08670 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.14□□□□□ -2.07
VIMP08670 AC078809.1-201ENST00000427601 140 ntBASIC2.14□□□□□ -2.07
VIMP08670 CBX3P6-201ENST00000430257 527 ntBASIC2.14□□□□□ -2.07
VIMP08670 MTND3P21-201ENST00000433774 331 ntBASIC2.14□□□□□ -2.07
VIMP08670 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.14□□□□□ -2.07
VIMP08670 PRELID3BP1-201ENST00000457142 540 ntBASIC2.14□□□□□ -2.07
VIMP08670 PMCHL2-203ENST00000457791 237 ntBASIC2.14□□□□□ -2.07
VIMP08670 AC083904.1-201ENST00000487828 231 ntBASIC2.14□□□□□ -2.07
VIMP08670 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.14□□□□□ -2.07
VIMP08670 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.14□□□□□ -2.07
VIMP08670 RNA5SP356-201ENST00000515972 94 ntBASIC2.14□□□□□ -2.07
VIMP08670 RNU2-19P-201ENST00000517288 84 ntBASIC2.14□□□□□ -2.07
VIMP08670 TRAV32-201ENST00000553993 340 ntBASIC2.14□□□□□ -2.07
VIMP08670 AC012557.2-201ENST00000605919 418 ntBASIC2.14□□□□□ -2.07
VIMP08670 DISC2.1-201ENST00000612827 205 ntBASIC2.14□□□□□ -2.07
VIMP08670 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VIMP08670 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
VIMP08670 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.13□□□□□ -2.07
VIMP08670 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VIMP08670 Y_RNA.38-201ENST00000362617 102 ntBASIC2.13□□□□□ -2.07
VIMP08670 SNORD115-3-201ENST00000363100 82 ntBASIC2.13□□□□□ -2.07
VIMP08670 RNU6-1090P-201ENST00000364065 94 ntBASIC2.13□□□□□ -2.07
VIMP08670 RNU6-522P-201ENST00000364497 107 ntBASIC2.13□□□□□ -2.07
VIMP08670 Y_RNA.504-201ENST00000384481 104 ntBASIC2.13□□□□□ -2.07
VIMP08670 SNORA48.2-201ENST00000390926 124 ntBASIC2.13□□□□□ -2.07
VIMP08670 SNORA48.3-201ENST00000391081 134 ntBASIC2.13□□□□□ -2.07
VIMP08670 EIF4E2P1-201ENST00000393781 255 ntBASIC2.13□□□□□ -2.07
VIMP08670 AP000275.1-201ENST00000411943 390 ntBASIC2.13□□□□□ -2.07
VIMP08670 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.13□□□□□ -2.07
VIMP08670 AL133396.1-201ENST00000432048 687 ntBASIC2.13□□□□□ -2.07
VIMP08670 ERLEC1P1-201ENST00000433806 578 ntBASIC2.13□□□□□ -2.07
VIMP08670 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.13□□□□□ -2.07
VIMP08670 AC025750.2-201ENST00000442609 450 ntBASIC2.13□□□□□ -2.07
VIMP08670 RNU6-1037P-201ENST00000459571 107 ntBASIC2.13□□□□□ -2.07
VIMP08670 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.13□□□□□ -2.07
VIMP08670 AC007375.1-201ENST00000554513 578 ntBASIC2.13□□□□□ -2.07
VIMP08670 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.13□□□□□ -2.07
VIMP08670 MIR4529-201ENST00000578110 78 ntBASIC2.13□□□□□ -2.07
VIMP08670 MIR4287-201ENST00000579398 78 ntBASIC2.13□□□□□ -2.07
VIMP08670 AC007229.1-201ENST00000590455 412 ntBASIC2.13□□□□□ -2.07
VIMP08670 BNIP3P22-201ENST00000593399 556 ntBASIC2.13□□□□□ -2.07
VIMP08670 AC078795.3-201ENST00000602913 472 ntBASIC2.13□□□□□ -2.07
VIMP08670 AL627230.6-201ENST00000611129 280 ntBASIC2.13□□□□□ -2.07
VIMP08670 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.13□□□□□ -2.07
VIMP08670 FER-210ENST00000628534 558 ntTSL 5 BASIC2.13□□□□□ -2.07
VIMP08670 MIR1248-201ENST00000629190 106 ntBASIC2.13□□□□□ -2.07
VIMP08670 MIR1321-201ENST00000637766 79 ntBASIC2.13□□□□□ -2.07
VIMP08670 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
VIMP08670 AC121333.1-201ENST00000567488 2709 ntBASIC2.12□□□□□ -2.07
VIMP08670 RNU6-1329P-201ENST00000365664 107 ntBASIC2.12□□□□□ -2.07
VIMP08670 SNORD116-4-201ENST00000384733 96 ntBASIC2.12□□□□□ -2.07
VIMP08670 MIR221-201ENST00000385135 110 ntBASIC2.12□□□□□ -2.07
VIMP08670 MIR1262-201ENST00000408276 93 ntBASIC2.12□□□□□ -2.07
VIMP08670 Z92545.1-201ENST00000411782 234 ntBASIC2.12□□□□□ -2.07
VIMP08670 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.12□□□□□ -2.07
VIMP08670 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.12□□□□□ -2.07
VIMP08670 AL359672.1-201ENST00000442302 409 ntBASIC2.12□□□□□ -2.07
VIMP08670 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.12□□□□□ -2.07
VIMP08670 RN7SL274P-201ENST00000492268 272 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms