Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA3O43365 AC010999.1-201ENST00000611856 324 ntBASIC3.09□□□□□ -1.91
HOXA3O43365 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA3O43365 ZNF204P-201ENST00000416749 2397 ntBASIC3.09□□□□□ -1.92
HOXA3O43365 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.09□□□□□ -1.92
HOXA3O43365 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.09□□□□□ -1.92
HOXA3O43365 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA3O43365 RNU6-750P-201ENST00000390946 107 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 U3.26-201ENST00000391236 204 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 MIR1183-201ENST00000408856 89 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 Y_RNA.595-201ENST00000410403 105 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 RPS29P4-201ENST00000414733 161 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AC017079.2-201ENST00000416102 485 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 HMGN2P31-201ENST00000432430 273 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AC083863.1-201ENST00000438811 231 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA3O43365 PRSS3P4-201ENST00000453323 162 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AL133162.1-201ENST00000463228 453 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AC117440.1-201ENST00000474107 571 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA3O43365 RNU6-182P-201ENST00000516970 105 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXA3O43365 GNRHR2P1-201ENST00000555315 631 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.08□□□□□ -1.92
HOXA3O43365 CYP4A27P-201ENST00000567218 190 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 MIR3136-201ENST00000583498 78 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AL357075.2-201ENST00000614906 189 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AL773545.4-201ENST00000637262 310 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 AL513478.4-201ENST00000641636 310 ntBASIC3.08□□□□□ -1.92
HOXA3O43365 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA3O43365 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA3O43365 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA3O43365 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA3O43365 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA3O43365 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA3O43365 BX322639.1-202ENST00000423987 2213 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA3O43365 AC007496.3-201ENST00000624987 3443 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.07□□□□□ -1.92
HOXA3O43365 RNU5F-3P-201ENST00000363767 117 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 RNU4-56P-201ENST00000364700 142 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 RNU6-326P-201ENST00000365480 107 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 Y_RNA.785-201ENST00000384290 109 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 RNU4-70P-201ENST00000384579 139 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 RNU6-21P-201ENST00000384710 107 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 MIR549A-201ENST00000385268 96 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 MIR147B-201ENST00000390185 80 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXA3O43365 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXA3O43365 SNORA53-201ENST00000391141 249 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 RHEBP3-201ENST00000411920 351 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA3O43365 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXA3O43365 HMGN2P7-201ENST00000456186 273 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 AC104619.4-201ENST00000510773 249 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXA3O43365 RNA5SP164-201ENST00000516533 110 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 Y_RNA.700-201ENST00000516806 100 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 MIR3923-201ENST00000579521 83 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXA3O43365 MZT1P2-201ENST00000604387 248 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 AC098479.1-201ENST00000609225 154 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 MIR486-1-201ENST00000612171 68 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 uc_338.32-201ENST00000615087 172 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 U2.14-201ENST00000615943 113 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 AC127459.3-201ENST00000624328 466 ntBASIC3.07□□□□□ -1.92
HOXA3O43365 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXA3O43365 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXA3O43365 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXA3O43365 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 Y_RNA.40-201ENST00000362645 93 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 RNU6-1010P-201ENST00000362757 107 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 SNORD114-19-201ENST00000363072 75 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 Y_RNA.179-201ENST00000363844 90 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HOXA3O43365 Y_RNA.569-201ENST00000384749 103 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 Y_RNA.570-201ENST00000384750 101 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
HOXA3O43365 MIR208B-201ENST00000401172 77 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AL139156.1-201ENST00000412785 841 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AL390729.2-201ENST00000416137 156 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC096649.2-201ENST00000416186 393 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA3O43365 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXA3O43365 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 AL136097.1-201ENST00000456945 913 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 SNORA31.1-201ENST00000515993 133 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 RN7SKP18-201ENST00000516005 275 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 SNORA31.5-201ENST00000516190 133 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 RNU2-31P-201ENST00000516954 155 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 SNORA81.3-201ENST00000517283 198 ntBASIC3.06□□□□□ -1.92
HOXA3O43365 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXA3O43365 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXA3O43365 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms