Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SNORA26.3-201ENST00000391119 136 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AL353705.4-201ENST00000449661 238 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AL513124.1-201ENST00000450410 614 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 EEF1B2P7-201ENST00000451177 676 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 RPL7P42-201ENST00000481005 679 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 SNORA31.16-201ENST00000516773 139 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 RN7SKP272-201ENST00000516988 232 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AC093027.1-201ENST00000546698 429 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 MIR4795-201ENST00000584182 89 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AC009318.2-201ENST00000610917 651 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AC133104.2-201ENST00000615272 193 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AL359314.1-201ENST00000616913 261 ntBASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
CCDC9Q9Y3X0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 snoU2_19.1-201ENST00000362361 80 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 RNU1-70P-201ENST00000362618 164 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 SNORD50.1-201ENST00000362987 71 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 MTCO2P27-201ENST00000420740 428 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 USMG5P1-201ENST00000425964 177 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 AC236972.2-201ENST00000434979 310 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 APOOP3-201ENST00000536787 586 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 AC091544.4-201ENST00000555268 342 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 AC098657.3-201ENST00000620434 263 ntBASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
CCDC9Q9Y3X0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-1188P-201ENST00000363795 107 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 SNORA7.4-201ENST00000384249 137 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 RNA5SP184-201ENST00000411071 108 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 MTND4P28-201ENST00000426217 387 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 CYP2C59P-201ENST00000457790 269 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 Y_RNA.632-201ENST00000459189 102 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 RN7SL93P-201ENST00000463035 293 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 MIR5571-201ENST00000577998 113 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 AC005899.2-201ENST00000584353 90 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 7SK.7-201ENST00000603504 247 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 AC008121.3-201ENST00000618726 433 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 AC022140.2-201ENST00000623500 188 ntBASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
CCDC9Q9Y3X0 RNU1-72P-201ENST00000362976 153 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 MIR29B2-201ENST00000385055 81 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 MTCYBP4-201ENST00000401524 249 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RNU2-63P-201ENST00000410792 194 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RNU2-25P-201ENST00000411041 191 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AC006989.1-201ENST00000427212 131 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RPL23AP50-201ENST00000434149 455 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AC079354.2-201ENST00000453523 154 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RPS3P1-201ENST00000456781 192 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 Y_RNA.653-201ENST00000459091 95 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RPS29P26-201ENST00000477483 171 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 RN7SKP132-201ENST00000516001 208 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 MRPS36P4-201ENST00000534436 298 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 MIR2682-201ENST00000580305 110 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AL713866.2-201ENST00000603579 219 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 AL359697.1-201ENST00000624879 587 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 MTND4LP32-201ENST00000636111 270 ntBASIC4.24□□□□□ -1.73
CCDC9Q9Y3X0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC068647.1-201ENST00000489539 2265 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 SNORA29-201ENST00000384183 140 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 SNORA36A-201ENST00000384221 132 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 RNA5SP293-201ENST00000410527 113 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-1304P-201ENST00000411374 106 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AL357552.1-201ENST00000445254 415 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC108938.1-201ENST00000451204 136 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AL353752.1-201ENST00000454946 260 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC005741.1-201ENST00000511094 432 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 VTRNA2-2P-201ENST00000516091 103 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 SNORA70.19-201ENST00000516717 90 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 RNU6-1213P-201ENST00000517075 94 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 MIR3923-201ENST00000579521 83 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 Z98751.3-201ENST00000604447 521 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 ZNF299P-201ENST00000406845 1804 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 AL513302.2-201ENST00000562313 1842 ntBASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC9Q9Y3X0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC9Q9Y3X0 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms