Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR432-201ENST00000606207 94 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 SNX18P1Y-201ENST00000616231 511 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 uc_338.13-201ENST00000618243 179 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AF117829.1-206ENST00000621883 3802 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AL133383.2-201ENST00000622958 2336 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.24-201ENST00000362508 103 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-103P-201ENST00000363686 107 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP175-201ENST00000364275 119 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.415-201ENST00000384012 112 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-245P-201ENST00000384020 107 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 MIR129-1-201ENST00000384972 72 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-460P-201ENST00000391158 108 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 SNORA11F-201ENST00000408237 128 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AL356387.2-201ENST00000422272 243 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC146507.2-201ENST00000460608 476 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC090525.1-201ENST00000479116 478 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 KRTAP5-14P-201ENST00000502328 121 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 RNA5SP309-201ENST00000516670 106 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC006064.5-201ENST00000541782 248 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AL356575.1-201ENST00000603008 283 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC013791.1-201ENST00000616619 62 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC073308.1-201ENST00000623696 305 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 MIR3199-2-201ENST00000636243 86 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC011266.1-201ENST00000624119 3569 ntBASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.88□□□□□ -1.79
HIF3AQ9Y2N7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC002543.1-201ENST00000299783 1954 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-454P-201ENST00000364292 107 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.337-201ENST00000365312 102 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 SNORA8.3-201ENST00000384679 139 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 PTMAP5-201ENST00000393073 333 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 MIR208B-201ENST00000401172 77 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AL590139.1-201ENST00000416267 400 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 RPEP3-201ENST00000425462 676 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 PTGES3P4-201ENST00000426243 356 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC005300.1-201ENST00000428401 373 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC245047.8-201ENST00000456455 284 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC006445.2-201ENST00000510061 472 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 SCARNA8-201ENST00000515924 131 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 RNU2-12P-201ENST00000517216 168 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC024220.1-201ENST00000603675 484 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC113403.1-201ENST00000604910 193 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC083809.1-201ENST00000615051 472 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 MIR6129-201ENST00000616087 109 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 TUG1_4.1-201ENST00000619464 181 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 AC010329.5-201ENST00000623497 2174 ntBASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.87□□□□□ -1.79
HIF3AQ9Y2N7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 Z82217.1-201ENST00000625157 8149 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 MIR331-201ENST00000362302 94 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-407P-201ENST00000365280 104 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-429P-201ENST00000384582 108 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 MIR626-201ENST00000385032 94 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AC092017.2-201ENST00000427600 362 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 RPL23AP1-201ENST00000428990 471 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 RNU7-107P-201ENST00000459121 61 ntBASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.86□□□□□ -1.79
HIF3AQ9Y2N7 CYP4A27P-201ENST00000567218 190 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms