Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU4-24P-201ENST00000364565 139 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 RNU4-20P-201ENST00000365601 151 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AL445529.1-201ENST00000398713 389 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AL357139.1-201ENST00000407792 426 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 RPL23AP95-201ENST00000426806 265 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AL133396.1-201ENST00000432048 687 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC132942.1-201ENST00000486753 483 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC093259.1-201ENST00000509755 300 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 RNA5SP148-201ENST00000516527 94 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 RNU6-835P-201ENST00000516974 104 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 MIR3923-201ENST00000579521 83 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC080013.6-201ENST00000606185 215 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AL121757.2-201ENST00000611223 313 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 SDR42E1P4-201ENST00000620894 481 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.95□□□□□ -2.1
FOXA2Q9Y261 ZNF702P-202ENST00000434269 1966 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 AC008555.8-201ENST00000623602 2168 ntBASIC1.95□□□□□ -2.1
FOXA2Q9Y261 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC016717.2-201ENST00000609089 5141 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.517-201ENST00000384551 106 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AL512604.1-201ENST00000404812 257 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AP000275.1-201ENST00000411943 390 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC096920.1-201ENST00000423991 241 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 SEPT14P3-201ENST00000439401 183 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AL732372.2-207ENST00000445840 183 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AL513328.1-201ENST00000446460 224 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 SEPT14P2-201ENST00000453405 183 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 PMCHL2-203ENST00000457791 237 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RNU6-1208P-201ENST00000459588 107 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RPS27P21-201ENST00000486977 252 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC105313.1-201ENST00000509121 353 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC091874.1-201ENST00000511402 339 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RPL39P5-202ENST00000512505 151 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 SEPT14P4-201ENST00000513445 186 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 MIR449C-201ENST00000516047 92 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RNA5SP24-201ENST00000516478 95 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 RNU6-1069P-201ENST00000516612 133 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 FO082796.1-201ENST00000523795 183 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC109446.1-201ENST00000566172 220 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AC078795.3-201ENST00000602913 472 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 AL359314.1-201ENST00000616913 261 ntBASIC1.94□□□□□ -2.1
FOXA2Q9Y261 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
FOXA2Q9Y261 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC009541.1-201ENST00000438279 2662 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 MIR21-201ENST00000362134 72 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 Y_RNA.99-201ENST00000363138 105 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AL359511.1-201ENST00000402970 211 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 U3.40-201ENST00000408706 208 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 RNU6-648P-201ENST00000410190 107 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 RN7SKP284-201ENST00000411002 343 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 BX510359.4-201ENST00000423750 193 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC104564.1-201ENST00000493028 407 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 ANXA2P1-201ENST00000505539 926 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 RNU6-1281P-201ENST00000516223 105 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 SNORA31.11-201ENST00000516528 139 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 RNU6-567P-201ENST00000516746 107 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 SNORD60.2-201ENST00000516883 86 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AP005660.1-201ENST00000522972 293 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC104576.1-201ENST00000524225 88 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AP005597.4-201ENST00000526762 229 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC021231.3-201ENST00000558497 370 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC007336.1-201ENST00000576365 3828 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC068944.2-201ENST00000610373 403 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.93□□□□□ -2.1
FOXA2Q9Y261 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXA2Q9Y261 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
FOXA2Q9Y261 U3.9-201ENST00000363823 204 ntBASIC1.92□□□□□ -2.1
FOXA2Q9Y261 SNORD32B-201ENST00000364460 84 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms