Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RNU6-527P-201ENST00000363425 104 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 Y_RNA.135-201ENST00000363439 95 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RNU1-91P-201ENST00000364746 163 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RNU6-336P-201ENST00000364891 107 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 Y_RNA.373-201ENST00000365600 103 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 Y_RNA.414-201ENST00000384011 101 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RNU6-214P-201ENST00000384130 107 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1222P-201ENST00000384615 107 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 SNORA41-201ENST00000384675 132 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR450B-201ENST00000401182 78 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 DPH3P2-201ENST00000422618 250 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AL513185.2-201ENST00000425543 193 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RPL30P4-201ENST00000429309 333 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RBMX2P4-201ENST00000441256 376 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 RPL23AP49-201ENST00000492925 468 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC026436.1-201ENST00000510537 270 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 TBCAP3-201ENST00000512475 312 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 IGKV3-31-201ENST00000523109 329 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AL133241.1-201ENST00000556832 487 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC105137.2-201ENST00000569073 466 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR3670-2-201ENST00000582974 65 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR3670-1-201ENST00000584160 65 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR3670-3-201ENST00000584855 65 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC069294.1-201ENST00000608397 350 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR3670-4-201ENST00000612260 65 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 AC090617.10-201ENST00000624308 134 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 MIR1291-201ENST00000627649 87 ntBASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC3Q9BQI4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 Y_RNA.72-201ENST00000362894 103 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 SNORD56.1-201ENST00000362913 68 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RNU6-827P-201ENST00000365553 106 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RNU1-57P-201ENST00000384491 166 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1245P-201ENST00000411130 106 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 EIF4EP4-201ENST00000424916 578 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RPS15AP10-201ENST00000432472 382 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 SNAP23P1-201ENST00000433229 246 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AC243964.1-201ENST00000441814 261 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 NFU1P2-201ENST00000448700 469 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RPL31P58-201ENST00000469001 379 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AC069439.1-201ENST00000494739 167 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 RN7SKP256-201ENST00000517201 314 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 MIR4658-201ENST00000584344 65 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 BNIP3P10-201ENST00000605360 577 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AC104237.2-201ENST00000612456 443 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 uc_338.15-201ENST00000615470 191 ntBASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
CCDC3Q9BQI4 AP000560.1-201ENST00000624150 1937 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 DEFA7P-201ENST00000382676 285 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 RNU6-510P-201ENST00000391239 108 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 VN1R36P-201ENST00000414936 291 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 MTCO3P46-201ENST00000425787 232 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC023141.11-201ENST00000508864 202 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC008526.1-201ENST00000509149 338 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 RNU6-864P-201ENST00000516256 108 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC115990.1-201ENST00000526957 301 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC004486.1-201ENST00000546846 233 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 SCOCP1-201ENST00000554676 349 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 MIR1273D-201ENST00000577266 86 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC105245.1-201ENST00000581934 244 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC023043.2-201ENST00000589678 1026 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AL158827.2-201ENST00000602494 330 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 CTHRC1P1-201ENST00000605383 469 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AL022345.1-201ENST00000607292 135 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AL138726.1-201ENST00000614873 333 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AL691447.3-201ENST00000635020 330 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 AC069528.2-201ENST00000624849 1991 ntBASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC3Q9BQI4 Z82209.1-201ENST00000422141 2135 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 AC016717.2-201ENST00000609089 5141 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 RNU6-428P-201ENST00000362942 107 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1285P-201ENST00000363480 105 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 RNU6-1141P-201ENST00000364520 107 ntBASIC2.29□□□□□ -2.04
CCDC3Q9BQI4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms