Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MTATP6P3-201ENST00000581686 676 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC008749.1-201ENST00000597650 306 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC018889.1-201ENST00000605372 397 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC002044.1-201ENST00000606707 158 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 AC009509.4-201ENST00000619202 509 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.04□□□□□ -2.08
ZNF560Q96MR9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
ZNF560Q96MR9 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
ZNF560Q96MR9 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RNU6-336P-201ENST00000364891 107 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 U8.13-201ENST00000390842 128 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RPS29P13-201ENST00000402041 169 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AL512604.1-201ENST00000404812 257 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RNA5SP450-201ENST00000411206 102 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 CDK8P2-201ENST00000415020 547 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 IFNA20P-201ENST00000436840 528 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 DNAJC19P4-201ENST00000440115 345 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC245102.2-201ENST00000448956 180 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RNU7-63P-201ENST00000459054 62 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RNU7-167P-201ENST00000459160 62 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 HMGB1P29-201ENST00000505659 499 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 RNU6-295P-201ENST00000516901 104 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC069113.1-201ENST00000517763 267 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC022880.1-201ENST00000534017 973 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF560Q96MR9 SNRPGP19-201ENST00000603826 189 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AL391646.1-201ENST00000603860 190 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AL356157.2-201ENST00000605122 111 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 uc_338.20-201ENST00000621563 178 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.03□□□□□ -2.08
ZNF560Q96MR9 AP000560.1-201ENST00000624150 1937 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AL356292.1-201ENST00000283110 373 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 RNU6-266P-201ENST00000364225 107 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 RNU6-1141P-201ENST00000364520 107 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 MIR676-201ENST00000390702 67 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 RNU2-20P-201ENST00000410425 191 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 Y_RNA.597-201ENST00000410463 100 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 SRIP3-201ENST00000413200 219 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AL117339.3-201ENST00000418733 162 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AL590556.1-201ENST00000423231 483 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 MTCO2P19-201ENST00000427513 598 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 PRELID3BP1-201ENST00000457142 540 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 RPL31P3-201ENST00000458430 332 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AC079140.3-201ENST00000511111 550 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.02□□□□□ -2.09
ZNF560Q96MR9 HIF1AP1-201ENST00000553642 175 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 MIR4287-201ENST00000579398 78 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AC103987.3-201ENST00000582071 292 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AC004908.3-201ENST00000610248 625 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
ZNF560Q96MR9 MIR6845-201ENST00000613182 61 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 AC097520.1-201ENST00000624435 385 ntBASIC2.02□□□□□ -2.09
ZNF560Q96MR9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
ZNF560Q96MR9 RNU6-428P-201ENST00000362942 107 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 RNU6-996P-201ENST00000365438 107 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 SNORD116-9-201ENST00000384000 95 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 SNORD116-3-201ENST00000384287 95 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 SNORD116-7-201ENST00000384404 95 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 SNORD116-5-201ENST00000384462 95 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC096920.1-201ENST00000423991 241 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC002486.1-201ENST00000435098 391 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AL360221.1-201ENST00000445989 335 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 RPL23AP3-201ENST00000453844 468 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 RNU7-180P-201ENST00000459240 63 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 RPS3AP17-201ENST00000472594 777 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AL163973.1-201ENST00000484753 577 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 PTP4A1P4-201ENST00000512479 322 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 MTND3P5-201ENST00000512798 333 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC006362.1-201ENST00000567392 174 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 MIR3136-201ENST00000583498 78 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AL109918.3-201ENST00000603072 338 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AL627230.6-201ENST00000611129 280 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC063943.3-201ENST00000615562 356 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 MIR7843-201ENST00000622274 79 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 AC090582.1-201ENST00000636321 199 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 ZNF702P-202ENST00000434269 1966 ntBASIC2.01□□□□□ -2.09
ZNF560Q96MR9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.01□□□□□ -2.09
ZNF560Q96MR9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2□□□□□ -2.09
ZNF560Q96MR9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
ZNF560Q96MR9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2□□□□□ -2.09
ZNF560Q96MR9 RNU6-43P-201ENST00000384302 107 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 Y_RNA.582-201ENST00000391023 95 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 MIR1262-201ENST00000408276 93 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2□□□□□ -2.09
ZNF560Q96MR9 MTCYBP8-201ENST00000422855 651 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 AC073415.1-201ENST00000449240 153 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 PMCHL2-203ENST00000457791 237 ntBASIC2□□□□□ -2.09
ZNF560Q96MR9 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2□□□□□ -2.09
ZNF560Q96MR9 AC108078.1-201ENST00000508073 725 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms