Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC087190.4-201ENST00000574616 8334 ntBASIC3.3□□□□□ -1.88
CCDC140Q96MF4 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CCDC140Q96MF4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU1-14P-201ENST00000362759 152 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU4-80P-201ENST00000363200 141 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNA5SP197-201ENST00000363357 119 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU6-1305P-201ENST00000364353 104 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU6-1289P-201ENST00000384431 106 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU2-54P-201ENST00000410299 190 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU2-61P-201ENST00000411069 191 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AC009963.1-201ENST00000417265 157 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 RNU5F-4P-201ENST00000516581 114 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 CYP4A43P-201ENST00000568156 121 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 DEFB117-201ENST00000602356 141 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AC005828.6-201ENST00000606610 232 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AC004792.1-201ENST00000614523 137 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AC083809.1-201ENST00000615051 472 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.29□□□□□ -1.88
CCDC140Q96MF4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CCDC140Q96MF4 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RNU1-75P-201ENST00000347264 129 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.122-201ENST00000363331 96 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.136-201ENST00000363444 102 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.275-201ENST00000364726 110 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.292-201ENST00000364904 97 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RNU6-1264P-201ENST00000383891 107 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.785-201ENST00000384290 109 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RNA5SP504-201ENST00000410676 117 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RNU6-1328P-201ENST00000410938 106 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.793-201ENST00000411222 111 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 HLA-N-201ENST00000437516 135 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 NDUFB4P10-201ENST00000452541 359 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 AL138752.1-201ENST00000452964 351 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RN7SL303P-201ENST00000469773 251 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RPS29P19-201ENST00000479709 171 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RNA5SP49-201ENST00000516450 115 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 IFITM8P-201ENST00000522529 394 ntBASIC3.28□□□□□ -1.88
CCDC140Q96MF4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CCDC140Q96MF4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 RNU6-454P-201ENST00000364292 107 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 SNORA70.2-201ENST00000364506 135 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.329-201ENST00000365209 107 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 MIR29B2-201ENST00000385055 81 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 MIR548I3-201ENST00000408378 149 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 MIR548I1-201ENST00000408810 149 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 YME1L1P1-201ENST00000429435 297 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 RPS29P12-201ENST00000460178 152 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 RNU6-1098P-201ENST00000516772 96 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.700-201ENST00000516806 100 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC024405.2-202ENST00000532731 184 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC023043.3-201ENST00000593113 385 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 MIR432-201ENST00000606207 94 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC107294.3-201ENST00000609211 526 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC098479.1-201ENST00000609225 154 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 AC011944.2-201ENST00000624440 683 ntBASIC3.27□□□□□ -1.89
CCDC140Q96MF4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CCDC140Q96MF4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.26□□□□□ -1.89
CCDC140Q96MF4 SNORD32B-201ENST00000364460 84 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 RNA5SP366-201ENST00000365454 123 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 U8.12-201ENST00000384701 133 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 MIR1294-201ENST00000408503 142 ntBASIC3.26□□□□□ -1.89
CCDC140Q96MF4 Y_RNA.626-201ENST00000411288 95 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms