Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ARL5AP1-201ENST00000418991 388 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 MTCO3P29-201ENST00000432119 779 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 RPL23AP30-201ENST00000432419 501 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC069257.2-201ENST00000441819 155 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 TOMM22P6-201ENST00000465035 409 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC145146.1-201ENST00000496370 254 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC42Q96M95 MIR544B-201ENST00000582372 78 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 MIR4769-201ENST00000584126 77 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 MIR548AC-201ENST00000585049 88 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 BNIP3P8-201ENST00000597863 560 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AL451064.1-201ENST00000607718 471 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC072039.2-201ENST00000608883 439 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC040896.1-201ENST00000613819 479 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC083806.3-201ENST00000614016 455 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AL359547.2-201ENST00000615810 418 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 MIR6835-201ENST00000621552 64 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AL138955.1-201ENST00000622881 1040 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC068647.2-201ENST00000637380 353 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 AC018630.2-201ENST00000534866 2403 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 AL356776.1-201ENST00000406574 447 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC42Q96M95 AC010099.3-201ENST00000423896 409 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 AC022447.4-201ENST00000504053 364 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 ATP5EP1-201ENST00000510257 156 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
CCDC42Q96M95 TRMT112P2-201ENST00000512910 132 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.7□□□□□ -2.3
CCDC42Q96M95 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.7□□□□□ -2.3
CCDC42Q96M95 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 AL034555.1-201ENST00000604816 211 ntBASIC0.7□□□□□ -2.3
CCDC42Q96M95 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.7□□□□□ -2.3
CCDC42Q96M95 AL159152.1-201ENST00000635019 2587 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 RNU6-1285P-201ENST00000363480 105 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 SNORA4.1-201ENST00000364263 144 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 RNU6-438P-201ENST00000365561 103 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 Z73417.1-201ENST00000447373 778 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC007327.1-201ENST00000447461 264 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 MTCO3P28-201ENST00000513351 515 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC108729.3-201ENST00000513484 108 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 SNORA70.22-201ENST00000517160 124 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 AL590095.2-201ENST00000604136 117 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC144521.1-201ENST00000607148 956 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 AC091965.4-201ENST00000607691 587 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.69□□□□□ -2.3
CCDC42Q96M95 MIR6767-201ENST00000637302 66 ntBASIC0.69□□□□□ -2.3
CCDC42Q96M95 SNORA32.2-201ENST00000384049 122 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 RNU6-413P-201ENST00000384115 107 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 MIR544A-201ENST00000384855 91 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC0.68□□□□□ -2.3
CCDC42Q96M95 MTND1P18-201ENST00000448191 573 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC0.68□□□□□ -2.3
CCDC42Q96M95 MTND3P5-201ENST00000512798 333 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 RNU2-10P-201ENST00000516375 211 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 RNU6-197P-201ENST00000516680 100 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 RNU6-165P-201ENST00000517170 99 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 AC068587.4-201ENST00000533893 186 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 AC004817.2-201ENST00000561794 651 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 MTCO2P2-201ENST00000591258 225 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.68□□□□□ -2.3
CCDC42Q96M95 AC131159.1-201ENST00000621854 213 ntBASIC0.68□□□□□ -2.3
CCDC42Q96M95 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
CCDC42Q96M95 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 RNU6-78P-201ENST00000362897 107 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 RNU1-96P-201ENST00000364163 162 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 RNU6-1179P-201ENST00000384667 107 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 SNORA12.2-201ENST00000391040 156 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 MTCYBP39-201ENST00000437562 491 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 RPS26P45-201ENST00000471748 340 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 AC005840.1-201ENST00000498412 377 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 AC108078.2-201ENST00000510750 236 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 AC136628.3-201ENST00000521868 290 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 AL442163.3-201ENST00000554110 156 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.67□□□□□ -2.3
CCDC42Q96M95 AP001004.1-201ENST00000582468 324 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 AC026585.1-201ENST00000619582 524 ntBASIC0.67□□□□□ -2.3
CCDC42Q96M95 SNORD114-24-201ENST00000365029 72 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 RNU6-142P-201ENST00000384019 107 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 COX6CP10-201ENST00000416832 224 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 AC114482.1-201ENST00000418010 247 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC42Q96M95 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.66□□□□□ -2.3
CCDC42Q96M95 TRBVA-201ENST00000498804 316 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 AF131216.2-201ENST00000512316 564 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 RNU6-322P-201ENST00000516010 103 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC42Q96M95 AC023050.2-201ENST00000544968 387 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 MIR4498-201ENST00000577599 66 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms