Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC008993.2-201ENST00000631744 806 ntBASIC1.95□□□□□ -2.1
HDDC3Q8N4P3 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 Y_RNA.99-201ENST00000363138 105 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 Y_RNA.118-201ENST00000363300 101 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP160-201ENST00000364866 120 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 RNU6-434P-201ENST00000384376 107 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AL021397.1-201ENST00000451806 248 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 MTND3P5-201ENST00000512798 333 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AP002963.1-201ENST00000530590 184 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 TRAV32-201ENST00000553993 340 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC145350.1-201ENST00000567426 208 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 MIR4703-201ENST00000577728 79 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC002984.1-201ENST00000591692 448 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 VN1R80P-201ENST00000597126 338 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC091805.2-201ENST00000603848 235 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AL034555.1-201ENST00000604816 211 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC104073.3-201ENST00000610942 955 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC099842.1-201ENST00000619919 596 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 AC022418.1-201ENST00000624118 445 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 MIR1248-201ENST00000629190 106 ntBASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.94□□□□□ -2.1
HDDC3Q8N4P3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC233981.2-201ENST00000611524 1614 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 U3.4-201ENST00000363352 213 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNU6-1164P-201ENST00000364428 107 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP190-201ENST00000365222 118 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNU6-282P-201ENST00000365357 103 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 Y_RNA.480-201ENST00000384364 102 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AL357139.1-201ENST00000407792 426 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNU2-20P-201ENST00000410425 191 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 EIF1AXP1-201ENST00000419267 435 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 PIGFP2-201ENST00000421400 651 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 UBE2V1P4-201ENST00000425374 344 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 KATNBL1P3-201ENST00000443475 909 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNU6-717P-201ENST00000459076 104 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC022447.4-201ENST00000504053 364 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 HMGB3P17-201ENST00000504195 649 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC010486.2-201ENST00000505572 483 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC079140.5-201ENST00000507882 310 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 BNIP3P16-201ENST00000589779 534 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 Z94722.1-201ENST00000604328 474 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 AC130454.1-201ENST00000622948 401 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 SNORD98-201ENST00000636377 67 ntBASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
HDDC3Q8N4P3 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AL390237.1-201ENST00000404226 1415 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNU6-181P-201ENST00000363225 107 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNY1P10-201ENST00000363268 113 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNU4-56P-201ENST00000364700 142 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNA5SP138-201ENST00000365098 114 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 SNORD70.1-201ENST00000391007 85 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNU6-248P-201ENST00000410720 107 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 EIF4EP2-201ENST00000422816 654 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AL451074.3-201ENST00000437709 472 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC243964.1-201ENST00000441814 261 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC244505.5-201ENST00000443639 207 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RPL23AP7-203ENST00000449021 469 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AL031274.1-201ENST00000450334 232 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC145146.1-201ENST00000496370 254 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 RNU6-445P-201ENST00000516949 107 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 Y_RNA.717-201ENST00000517106 92 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC012414.6-201ENST00000568241 401 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 MIR3136-201ENST00000583498 78 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC068790.2-201ENST00000602601 557 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC018889.1-201ENST00000605372 397 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC072046.2-201ENST00000618366 268 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 AC009161.2-201ENST00000624626 138 ntBASIC1.92□□□□□ -2.1
HDDC3Q8N4P3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms