Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 SNORD116-20-201ENST00000384529 92 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 Y_RNA.534-201ENST00000384599 112 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AL365338.1-201ENST00000422282 858 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 MTCYBP5-201ENST00000423752 1135 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 MTCO1P3-201ENST00000429327 192 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC245047.7-201ENST00000440265 293 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 RPL18AP17-201ENST00000455326 198 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC026414.1-201ENST00000504046 698 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 RNA5SP134-201ENST00000516492 96 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 MTND1P36-201ENST00000522384 936 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 APOOP3-201ENST00000536787 586 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC122134.1-202ENST00000569111 1201 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 MIR4293-201ENST00000584305 78 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC091135.1-201ENST00000585943 307 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AL136363.2-201ENST00000604173 851 ntBASIC0.22□□□□□ -2.37
HIST1H1AQ02539 AC027514.1-201ENST00000588561 1603 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU1-96P-201ENST00000364163 162 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU6-395P-201ENST00000365662 106 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU6-969P-201ENST00000383900 105 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU6-72P-201ENST00000384285 79 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU2-42P-201ENST00000410697 113 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNA5SP111-201ENST00000411386 101 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.21□□□□□ -2.38
HIST1H1AQ02539 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.21□□□□□ -2.38
HIST1H1AQ02539 MIR449C-201ENST00000516047 92 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 RNU6-496P-201ENST00000516145 99 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 BNIP3P6-201ENST00000549284 499 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 MIR1273C-201ENST00000578669 77 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 AC126177.8-201ENST00000618339 1015 ntBASIC0.21□□□□□ -2.38
HIST1H1AQ02539 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
HIST1H1AQ02539 MIR16-2-201ENST00000362117 81 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 SNORA80D-201ENST00000384488 135 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AF228730.1-201ENST00000397972 663 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 MTCO3P41-201ENST00000414801 328 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 DEFB130D-201ENST00000426866 237 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC092423.1-201ENST00000430165 186 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 USP9YP14-201ENST00000430663 563 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AL035398.1-201ENST00000430869 322 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC006026.2-201ENST00000457376 180 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 RNU6-1132P-201ENST00000459214 107 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC104806.1-201ENST00000508720 308 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC024589.1-201ENST00000512207 263 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 RN7SKP12-201ENST00000516275 143 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 RNU6-405P-201ENST00000516637 110 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 RNU6-467P-201ENST00000517027 110 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 RNU6-64P-201ENST00000517119 105 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AC016911.1-201ENST00000613297 452 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 MIR6734-201ENST00000621166 68 ntBASIC0.2□□□□□ -2.38
HIST1H1AQ02539 AL159152.1-201ENST00000635019 2587 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 RNU6-792P-201ENST00000363490 107 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 VTRNA1-3-201ENST00000365645 89 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 MIR19A-201ENST00000384878 82 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 MTCO2P12-201ENST00000427426 682 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 AC113410.1-201ENST00000505029 247 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 AC105758.1-201ENST00000506038 399 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 RNU5F-2P-201ENST00000516066 82 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 RNA5SP220-201ENST00000516298 104 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 AC004987.4-201ENST00000603383 338 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
HIST1H1AQ02539 SCARNA4-202ENST00000625402 129 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 SNORD3E-202ENST00000627253 216 ntBASIC0.19□□□□□ -2.38
HIST1H1AQ02539 RNU5B-1-201ENST00000363286 116 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 Y_RNA.363-201ENST00000365529 113 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 RNU6-1237P-201ENST00000384777 107 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.18□□□□□ -2.38
HIST1H1AQ02539 BTF3L4P1-201ENST00000413813 468 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 FABP5P4-201ENST00000437203 171 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 SNRPEP8-201ENST00000442866 260 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC073910.1-201ENST00000445047 438 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AL583843.1-201ENST00000456070 346 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 MIR4711-201ENST00000578274 70 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC068620.3-201ENST00000602749 560 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC012557.2-201ENST00000605919 418 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC021506.2-201ENST00000612354 169 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC093913.1-201ENST00000614178 329 ntBASIC0.18□□□□□ -2.38
HIST1H1AQ02539 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.18□□□□□ -2.38
HIST1H1AQ02539 AC090625.1-201ENST00000357130 210 ntBASIC0.17□□□□□ -2.38
HIST1H1AQ02539 SNORA4.2-201ENST00000365313 147 ntBASIC0.17□□□□□ -2.38
HIST1H1AQ02539 RNU6-650P-201ENST00000365658 111 ntBASIC0.17□□□□□ -2.38
HIST1H1AQ02539 RNU6-701P-201ENST00000384059 107 ntBASIC0.17□□□□□ -2.38
HIST1H1AQ02539 MIR936-201ENST00000401264 98 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms