Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 U4.7-201ENST00000638126 106 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL4A3Q01955 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.24□□□□□ -1.89
COL4A3Q01955 AL365361.1-201ENST00000566942 3481 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL4A3Q01955 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL4A3Q01955 Y_RNA.274-201ENST00000364714 101 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AL033519.2-201ENST00000403958 392 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 MIR1290-201ENST00000408735 78 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 RNU2-20P-201ENST00000410425 191 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 NDUFB4P7-201ENST00000423198 363 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AL672296.1-201ENST00000427780 2158 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC105272.1-201ENST00000438604 198 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC104332.1-201ENST00000440471 797 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 PIGFP3-201ENST00000441918 722 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC124916.1-201ENST00000444020 547 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.24□□□□□ -1.89
COL4A3Q01955 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A3Q01955 SCARNA24.2-201ENST00000516968 130 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 RNA5SP291-201ENST00000517222 105 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 CASP1P1-201ENST00000526345 212 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.24□□□□□ -1.89
COL4A3Q01955 SNRPGP15-201ENST00000600149 222 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC240442.1-201ENST00000616055 283 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 AC131238.1-201ENST00000617135 328 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 U6.92-201ENST00000636464 89 ntBASIC3.24□□□□□ -1.89
COL4A3Q01955 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 AP003122.5-201ENST00000527668 3766 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.23□□□□□ -1.89
COL4A3Q01955 Y_RNA.200-201ENST00000364018 102 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
COL4A3Q01955 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A3Q01955 BX679664.1-201ENST00000434429 253 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 AL078601.1-201ENST00000444542 271 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.23□□□□□ -1.89
COL4A3Q01955 AC010285.1-201ENST00000470580 392 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 RPS23P5-201ENST00000495419 428 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 MIR2276-201ENST00000516886 89 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 RNA5SP165-201ENST00000517142 115 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 MIR4300-201ENST00000581016 96 ntBASIC3.23□□□□□ -1.89
COL4A3Q01955 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.23□□□□□ -1.89
COL4A3Q01955 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL4A3Q01955 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A3Q01955 AC015813.6-201ENST00000624409 5808 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A3Q01955 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A3Q01955 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.22□□□□□ -1.89
COL4A3Q01955 RNU2-68P-201ENST00000410878 191 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 RPL21P40-201ENST00000428586 483 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 SETP5-201ENST00000437270 562 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.22□□□□□ -1.89
COL4A3Q01955 AC016700.2-201ENST00000446011 156 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 U8.22-201ENST00000459141 133 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 RPL23AP67-201ENST00000465341 474 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 RNU6-1012P-201ENST00000516606 109 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 SNORA31.18-201ENST00000517043 134 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 AC011602.1-201ENST00000546484 331 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.22□□□□□ -1.89
COL4A3Q01955 RPL23AP78-201ENST00000599928 470 ntBASIC3.22□□□□□ -1.89
COL4A3Q01955 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL4A3Q01955 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.21□□□□□ -1.89
COL4A3Q01955 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.21□□□□□ -1.89
COL4A3Q01955 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
COL4A3Q01955 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
COL4A3Q01955 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A3Q01955 AC233981.2-201ENST00000611524 1614 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL4A3Q01955 AL157777.2-201ENST00000258070 137 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 Y_RNA.16-201ENST00000362421 102 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 RNU6-527P-201ENST00000363425 104 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 RNY1-201ENST00000364228 113 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 Y_RNA.226-201ENST00000364337 114 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 RNU6-1181P-201ENST00000384191 106 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 MIR184-201ENST00000384962 84 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 RNA5SP31-201ENST00000411144 127 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 VWA8P1-201ENST00000510889 176 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.21□□□□□ -1.9
COL4A3Q01955 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.21□□□□□ -1.9
COL4A3Q01955 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.21□□□□□ -1.9
COL4A3Q01955 AC090617.3-201ENST00000573670 475 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 AC090132.2-201ENST00000615881 347 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.21□□□□□ -1.9
COL4A3Q01955 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
COL4A3Q01955 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms