Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.7□□□□□ -1.82
RNF4P78317 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
RNF4P78317 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.69□□□□□ -1.82
RNF4P78317 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
RNF4P78317 RNU6-799P-201ENST00000363567 107 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RNU6-727P-201ENST00000363592 107 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RNU6-682P-201ENST00000363843 106 ntBASIC3.69□□□□□ -1.82
RNF4P78317 Y_RNA.179-201ENST00000363844 90 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RNA5SP399-201ENST00000364003 117 ntBASIC3.69□□□□□ -1.82
RNF4P78317 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
RNF4P78317 RNU6-19P-201ENST00000384718 107 ntBASIC3.69□□□□□ -1.82
RNF4P78317 SNORA3C-201ENST00000408792 125 ntBASIC3.69□□□□□ -1.82
RNF4P78317 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.69□□□□□ -1.82
RNF4P78317 AL591419.1-201ENST00000427423 339 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.69□□□□□ -1.82
RNF4P78317 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.69□□□□□ -1.82
RNF4P78317 AC010099.1-201ENST00000455434 375 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RN7SL330P-201ENST00000469709 307 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC091179.3-201ENST00000474761 144 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC025554.1-201ENST00000505641 188 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC074198.2-201ENST00000508153 258 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RNU6-406P-201ENST00000516470 107 ntBASIC3.69□□□□□ -1.82
RNF4P78317 RNA5SP179-201ENST00000517284 121 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.69□□□□□ -1.82
RNF4P78317 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC010620.2-201ENST00000600135 313 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC091152.3-201ENST00000604227 325 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC091167.4-201ENST00000605079 184 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AC092628.2-201ENST00000622492 339 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AL773545.4-201ENST00000637262 310 ntBASIC3.69□□□□□ -1.82
RNF4P78317 AL513478.4-201ENST00000641636 310 ntBASIC3.69□□□□□ -1.82
RNF4P78317 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
RNF4P78317 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
RNF4P78317 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
RNF4P78317 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.68□□□□□ -1.82
RNF4P78317 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
RNF4P78317 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
RNF4P78317 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
RNF4P78317 RNU6-1020P-201ENST00000363684 107 ntBASIC3.68□□□□□ -1.82
RNF4P78317 RNU6-662P-201ENST00000384253 104 ntBASIC3.68□□□□□ -1.82
RNF4P78317 RNU6-1289P-201ENST00000384431 106 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.68□□□□□ -1.82
RNF4P78317 AC007395.1-201ENST00000451333 677 ntBASIC3.68□□□□□ -1.82
RNF4P78317 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 RPL32P34-201ENST00000486380 400 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AIG1P1-201ENST00000503376 148 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.68□□□□□ -1.82
RNF4P78317 AC115990.1-201ENST00000526957 301 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AC018448.1-201ENST00000552843 316 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AC105137.2-201ENST00000569073 466 ntBASIC3.68□□□□□ -1.82
RNF4P78317 Z83818.1-201ENST00000603584 150 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AL162713.1-201ENST00000604480 262 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AL137843.1-201ENST00000605078 385 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AC011921.3-201ENST00000605540 361 ntBASIC3.68□□□□□ -1.82
RNF4P78317 AL590240.4-201ENST00000616908 390 ntBASIC3.68□□□□□ -1.82
RNF4P78317 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.68□□□□□ -1.82
RNF4P78317 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.68□□□□□ -1.82
RNF4P78317 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.68□□□□□ -1.82
RNF4P78317 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
RNF4P78317 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
RNF4P78317 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.67□□□□□ -1.82
RNF4P78317 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
RNF4P78317 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
RNF4P78317 AC002543.1-201ENST00000299783 1954 ntBASIC3.67□□□□□ -1.82
RNF4P78317 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.67□□□□□ -1.82
RNF4P78317 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
RNF4P78317 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.67□□□□□ -1.82
RNF4P78317 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
RNF4P78317 RNU6-187P-201ENST00000384139 106 ntBASIC3.67□□□□□ -1.82
RNF4P78317 RNU6-793P-201ENST00000384233 104 ntBASIC3.67□□□□□ -1.82
RNF4P78317 RNU6-198P-201ENST00000384258 104 ntBASIC3.67□□□□□ -1.82
RNF4P78317 RNU6-378P-201ENST00000384324 107 ntBASIC3.67□□□□□ -1.82
RNF4P78317 SNORA46.1-201ENST00000391069 153 ntBASIC3.67□□□□□ -1.82
RNF4P78317 U3.26-201ENST00000391236 204 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AL512633.1-201ENST00000399931 655 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.67□□□□□ -1.82
RNF4P78317 RPL23AP36-201ENST00000413895 458 ntBASIC3.67□□□□□ -1.82
RNF4P78317 RAB28P5-201ENST00000427490 651 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AL714022.1-201ENST00000439897 151 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC005042.3-201ENST00000453230 174 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC026784.1-201ENST00000507986 352 ntBASIC3.67□□□□□ -1.82
RNF4P78317 RNU5F-2P-201ENST00000516066 82 ntBASIC3.67□□□□□ -1.82
RNF4P78317 YPEL5P3-201ENST00000547227 352 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC233702.2-202ENST00000562547 291 ntBASIC3.67□□□□□ -1.82
RNF4P78317 CYP4A27P-201ENST00000567218 190 ntBASIC3.67□□□□□ -1.82
RNF4P78317 MIR3186-201ENST00000577404 85 ntBASIC3.67□□□□□ -1.82
RNF4P78317 MIR3145-201ENST00000580727 82 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AL020997.2-201ENST00000602607 184 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC022441.3-201ENST00000605737 136 ntBASIC3.67□□□□□ -1.82
RNF4P78317 AC069200.1-201ENST00000609511 323 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms