Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR340-201ENST00000362125 95 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 MIR412-201ENST00000362142 91 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNU6-862P-201ENST00000362804 105 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 SNORD32B-201ENST00000364460 84 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNY3P13-201ENST00000365542 102 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNU6-946P-201ENST00000383878 107 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 MIR508-201ENST00000384857 115 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNU6-321P-201ENST00000410912 106 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RPS3AP1-201ENST00000413190 320 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 BTF3L4P1-201ENST00000413813 468 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 ELOCP17-201ENST00000414751 326 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 ELOCP9-201ENST00000418624 239 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.41□□□□□ -2.34
FOXA3P55318 RPS25P9-201ENST00000435591 252 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.41□□□□□ -2.34
FOXA3P55318 AL008629.1-201ENST00000438615 184 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 ART2BP-201ENST00000453501 499 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
FOXA3P55318 SNORD124-201ENST00000459577 104 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.41□□□□□ -2.34
FOXA3P55318 AC034244.1-201ENST00000507687 207 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
FOXA3P55318 AC074344.1-201ENST00000512823 224 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 MTCO3P28-201ENST00000513351 515 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AC112206.3-201ENST00000514578 389 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNA5SP168-201ENST00000516642 112 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 RNU6-165P-201ENST00000517170 99 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.41□□□□□ -2.34
FOXA3P55318 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.41□□□□□ -2.34
FOXA3P55318 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.41□□□□□ -2.34
FOXA3P55318 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.41□□□□□ -2.34
FOXA3P55318 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC0.41□□□□□ -2.34
FOXA3P55318 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.41□□□□□ -2.34
FOXA3P55318 SNORA59B-202ENST00000578183 701 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 DEFB131E-202ENST00000602581 683 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AC245297.2-201ENST00000610119 565 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AL512506.1-201ENST00000613918 449 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 AL512427.1-201ENST00000618593 349 ntBASIC0.41□□□□□ -2.34
FOXA3P55318 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
FOXA3P55318 OR4G2P-201ENST00000328113 903 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 MIR96-201ENST00000362288 78 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 RNU4-79P-201ENST00000362764 141 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 RNU6-190P-201ENST00000384154 102 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 RN7SKP266-201ENST00000410232 287 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC0.4□□□□□ -2.35
FOXA3P55318 RPS26P5-201ENST00000418544 335 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.4□□□□□ -2.35
FOXA3P55318 MTCO3P29-201ENST00000432119 779 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 RPS26P45-201ENST00000471748 340 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 BET1P1-201ENST00000482276 359 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 COX6CP6-201ENST00000490840 228 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC021146.8-201ENST00000507455 733 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AF131216.2-201ENST00000512316 564 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC108729.3-201ENST00000513484 108 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 RNA5SP121-201ENST00000516537 101 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.4□□□□□ -2.35
FOXA3P55318 AC008507.2-201ENST00000588402 1176 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 BNIP3P8-201ENST00000597863 560 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC016727.1-205ENST00000605437 569 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 MIR3976-201ENST00000606807 139 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.4□□□□□ -2.35
FOXA3P55318 AC083806.3-201ENST00000614016 455 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.4□□□□□ -2.35
FOXA3P55318 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.4□□□□□ -2.35
FOXA3P55318 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
FOXA3P55318 RNU4-15P-201ENST00000362613 141 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 RNU6-110P-201ENST00000384508 104 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 MIR544A-201ENST00000384855 91 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 SNORA12.2-201ENST00000391040 156 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 MTCO3P41-201ENST00000414801 328 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 USP9YP11-201ENST00000427537 717 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AL603825.1-201ENST00000438481 80 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 ATP5J2P3-201ENST00000451550 258 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA3P55318 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.39□□□□□ -2.35
FOXA3P55318 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.39□□□□□ -2.35
FOXA3P55318 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.39□□□□□ -2.35
FOXA3P55318 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA3P55318 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA3P55318 RNA5SP102-201ENST00000516865 106 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AP003049.1-201ENST00000529418 457 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC025423.5-201ENST00000550230 219 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC008015.1-201ENST00000555505 465 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.39□□□□□ -2.35
FOXA3P55318 AC133485.1-201ENST00000567176 124 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC138907.6-201ENST00000568401 126 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 KC877982.1-201ENST00000602313 470 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC068620.3-201ENST00000602749 560 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 BNIP3P10-201ENST00000605360 577 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AL158032.1-201ENST00000605401 106 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AC104073.3-201ENST00000610942 955 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 U6.42-201ENST00000618440 107 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 AL138955.1-201ENST00000622881 1040 ntBASIC0.39□□□□□ -2.35
FOXA3P55318 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA3P55318 AL159152.1-201ENST00000635019 2587 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms