Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
FOXA1P55317 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
FOXA1P55317 MIR337-201ENST00000362281 93 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU4-21P-201ENST00000362802 126 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU6-1287P-201ENST00000362914 107 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU6-74P-201ENST00000384235 107 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU5A-2P-201ENST00000384337 116 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU6-45P-201ENST00000384471 107 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RNU6-1060P-201ENST00000384664 107 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MIR29B2-201ENST00000385055 81 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MIR29C-201ENST00000385231 88 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 SNORA40.6-201ENST00000391153 128 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MIR1283-2-201ENST00000408621 87 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MTND3P17-201ENST00000416968 344 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RPL31P35-201ENST00000431058 377 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 GPR143P-201ENST00000434155 205 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC015922.2-201ENST00000435593 184 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AL121601.2-201ENST00000438019 707 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA1P55317 AC007969.2-201ENST00000441891 191 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC079781.2-201ENST00000446424 169 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RPL39P29-201ENST00000447779 157 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 ART2BP-201ENST00000453501 499 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AL033528.1-201ENST00000453780 140 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AL162395.1-201ENST00000457882 422 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA1P55317 RNA5SP57-201ENST00000459463 123 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 RPL30P1-201ENST00000488676 339 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA1P55317 AC074344.1-201ENST00000512823 224 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA1P55317 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.21□□□□□ -2.22
FOXA1P55317 AC060788.1-201ENST00000521318 469 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA1P55317 AC018630.3-201ENST00000542637 96 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.21□□□□□ -2.22
FOXA1P55317 MIR3660-201ENST00000584845 100 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC091135.1-201ENST00000585943 307 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 MIR98-201ENST00000606724 119 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AP001506.1-201ENST00000615444 211 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC063943.3-201ENST00000615562 356 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC023510.2-201ENST00000622162 746 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AC097372.5-201ENST00000623665 376 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.21□□□□□ -2.22
FOXA1P55317 U6.114-201ENST00000636407 96 ntBASIC1.21□□□□□ -2.22
FOXA1P55317 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
FOXA1P55317 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
FOXA1P55317 RNY1P10-201ENST00000363268 113 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 RNU6-527P-201ENST00000363425 104 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 RNU6-743P-201ENST00000364151 106 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 RNU6-297P-201ENST00000384636 107 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 MIR1-2-201ENST00000384961 85 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 MT-TH-201ENST00000387441 69 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA1P55317 AL590556.1-201ENST00000423231 483 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 MTCO3P46-201ENST00000425787 232 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 RPS15AP10-201ENST00000432472 382 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA1P55317 AC092473.1-201ENST00000441098 221 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.2□□□□□ -2.22
FOXA1P55317 AL122001.1-201ENST00000457027 370 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.2□□□□□ -2.22
FOXA1P55317 PTP4A1P4-201ENST00000512479 322 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC104136.1-201ENST00000512969 394 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA1P55317 RNU6-1178P-201ENST00000516674 107 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 RNU1-92P-201ENST00000517017 135 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.2□□□□□ -2.22
FOXA1P55317 AP003072.2-201ENST00000527756 676 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.2□□□□□ -2.22
FOXA1P55317 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA1P55317 AC137800.2-201ENST00000574375 120 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 BNIP3P25-201ENST00000596023 559 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AL078605.1-201ENST00000603529 500 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AL136363.2-201ENST00000604173 851 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AL050343.2-201ENST00000607338 280 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC087683.2-201ENST00000611384 326 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 MIR8070-201ENST00000616510 88 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 Z69720.2-201ENST00000624755 279 ntBASIC1.2□□□□□ -2.22
FOXA1P55317 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.2□□□□□ -2.22
FOXA1P55317 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.2□□□□□ -2.22
FOXA1P55317 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
FOXA1P55317 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.2□□□□□ -2.22
FOXA1P55317 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
FOXA1P55317 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
FOXA1P55317 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
FOXA1P55317 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.19□□□□□ -2.22
FOXA1P55317 RNU6-1303P-201ENST00000364841 107 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 RNU6-715P-201ENST00000365204 103 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 RNU6-108P-201ENST00000365558 107 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 SNORD14D-201ENST00000384390 87 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 SNORA8-201ENST00000384574 139 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 MIR544A-201ENST00000384855 91 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 MIR454-201ENST00000390180 115 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 RNU11-3P-201ENST00000391111 133 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 RNA5SP212-201ENST00000391223 107 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 Y_RNA.597-201ENST00000410463 100 ntBASIC1.19□□□□□ -2.22
FOXA1P55317 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms