Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RN7SKP27-201ENST00000410684 333 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 MRPS18CP6-201ENST00000423587 223 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 MTCYBP6-201ENST00000441810 138 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
HOXA1P49639 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 AC012308.1-201ENST00000451232 178 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC079354.2-201ENST00000453523 154 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 Y_RNA.639-201ENST00000458981 102 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 RN7SL807P-201ENST00000470923 297 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC109925.1-201ENST00000478069 331 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXA1P49639 RNU6-699P-201ENST00000517081 110 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 RN7SKP40-201ENST00000517211 242 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.42□□□□□ -2.02
HOXA1P49639 AP003072.1-201ENST00000531740 145 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 MIR3171-201ENST00000584270 74 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC078795.3-201ENST00000602913 472 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AL391813.1-201ENST00000603098 260 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.42□□□□□ -2.02
HOXA1P49639 AC024581.2-201ENST00000619986 252 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.42□□□□□ -2.02
HOXA1P49639 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA1P49639 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA1P49639 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA1P49639 MTND5P10-201ENST00000603719 1809 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
HOXA1P49639 AL355596.1-201ENST00000565399 3996 ntBASIC2.42□□□□□ -2.02
HOXA1P49639 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
HOXA1P49639 Y_RNA.5-201ENST00000362334 102 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 RNU6-1115P-201ENST00000362490 106 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 Y_RNA.197-201ENST00000364004 102 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 RNU6-1227P-201ENST00000383981 107 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 MIR144-201ENST00000384886 86 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AP000275.1-201ENST00000411943 390 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXA1P49639 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 AC105758.1-201ENST00000506038 399 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.41□□□□□ -2.02
HOXA1P49639 RNU6-470P-201ENST00000515954 104 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 Y_RNA.661-201ENST00000516003 99 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.41□□□□□ -2.02
HOXA1P49639 MIR3944-201ENST00000581277 108 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC090897.2-201ENST00000581715 130 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC011471.1-201ENST00000585766 187 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
HOXA1P49639 AC008739.2-201ENST00000597006 317 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 AL161756.2-201ENST00000604597 246 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 AC009318.2-201ENST00000610917 651 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 uc_338.22-201ENST00000622722 187 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 MIR3529-201ENST00000637713 78 ntBASIC2.41□□□□□ -2.02
HOXA1P49639 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.41□□□□□ -2.02
HOXA1P49639 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
HOXA1P49639 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.4□□□□□ -2.02
HOXA1P49639 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.4□□□□□ -2.02
HOXA1P49639 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXA1P49639 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXA1P49639 Y_RNA.40-201ENST00000362645 93 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RNU1-105P-201ENST00000363470 161 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RNY3P11-201ENST00000364153 102 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RNU6-99P-201ENST00000364721 107 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 Y_RNA.463-201ENST00000384271 102 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 Y_RNA.496-201ENST00000384444 101 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 SNORA80E-201ENST00000384744 137 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 BTF3L4P2-201ENST00000392798 346 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 AL591034.2-201ENST00000402839 359 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
HOXA1P49639 MIR1302-11-201ENST00000408051 138 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MIR548P-201ENST00000408336 84 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MIR1302-9-201ENST00000408365 138 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MIR1302-10-201ENST00000408734 138 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RNU6-1245P-201ENST00000411130 106 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC005534.2-201ENST00000431047 433 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 Z98742.2-201ENST00000431564 187 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 MTCO3P29-201ENST00000432119 779 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 Z82188.1-201ENST00000436709 154 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXA1P49639 RPL39P29-201ENST00000447779 157 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 AC112771.1-201ENST00000463581 102 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 RPL30P1-201ENST00000488676 339 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC097462.2-201ENST00000504623 481 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 SNORD19.2-201ENST00000516978 73 ntBASIC2.4□□□□□ -2.03
HOXA1P49639 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.4□□□□□ -2.03
HOXA1P49639 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXA1P49639 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.4□□□□□ -2.03
HOXA1P49639 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms