Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SNORA41-201ENST00000384675 132 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.33□□□□□ -1.88
SMARCA1P28370 AL591043.1-201ENST00000432461 424 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.33□□□□□ -1.88
SMARCA1P28370 AL163540.1-201ENST00000485382 386 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC090096.1-201ENST00000489168 390 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC022493.2-201ENST00000506122 481 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.33□□□□□ -1.88
SMARCA1P28370 CBX3P8-201ENST00000532412 525 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC010186.2-204ENST00000537668 439 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.33□□□□□ -1.88
SMARCA1P28370 RPL23AP78-201ENST00000599928 470 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AL158827.2-201ENST00000602494 330 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AC005014.2-201ENST00000607795 599 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 SCARNA15.3-201ENST00000626315 122 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 SCARNA4.1-201ENST00000628597 123 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 AL691447.3-201ENST00000635020 330 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
SMARCA1P28370 MTND4P27-201ENST00000450813 1354 ntBASIC3.33□□□□□ -1.88
SMARCA1P28370 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.33□□□□□ -1.88
SMARCA1P28370 RNU6-227P-201ENST00000362865 103 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 SNORD56.1-201ENST00000362913 68 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 SNORD50.1-201ENST00000362987 71 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AL591034.2-201ENST00000402839 359 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 RNA5SP344-201ENST00000411081 104 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AC011816.1-201ENST00000441346 546 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 MED28P2-201ENST00000475771 317 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.32□□□□□ -1.88
SMARCA1P28370 RNU6-976P-201ENST00000516086 111 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 RNU6-699P-201ENST00000517081 110 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 EIF4BP1-201ENST00000554881 351 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AC009163.5-201ENST00000575421 637 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AC005899.2-201ENST00000584353 90 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 BNIP3P16-201ENST00000589779 534 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AC091152.3-201ENST00000604227 325 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 AP001836.1-201ENST00000604675 523 ntBASIC3.32□□□□□ -1.88
SMARCA1P28370 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SMARCA1P28370 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SMARCA1P28370 SNORA22B-201ENST00000383876 138 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 Y_RNA.533-201ENST00000384596 114 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SMARCA1P28370 AC018865.2-201ENST00000423631 129 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 RPL23AP50-201ENST00000434149 455 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AC244505.4-201ENST00000434905 287 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AC007969.2-201ENST00000441891 191 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AL135938.1-201ENST00000443141 297 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 SSXP5-201ENST00000443473 287 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AL031659.1-201ENST00000447075 539 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 RPL31P41-201ENST00000477967 372 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AP001025.1-201ENST00000486139 332 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AC068781.1-201ENST00000488231 618 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 SNORD19.2-201ENST00000516978 73 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 RNU6-56P-201ENST00000516986 93 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.31□□□□□ -1.88
SMARCA1P28370 LARP7P3-201ENST00000579888 337 ntBASIC3.31□□□□□ -1.88
SMARCA1P28370 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.31□□□□□ -1.88
SMARCA1P28370 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.31□□□□□ -1.88
SMARCA1P28370 AC010889.1-201ENST00000566193 2666 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SMARCA1P28370 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SMARCA1P28370 Y_RNA.28-201ENST00000362554 111 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 RNU6-490P-201ENST00000362985 107 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 Y_RNA.202-201ENST00000364083 110 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 SNORA51.4-201ENST00000364993 124 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 RNU6-843P-201ENST00000384454 104 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AP000275.1-201ENST00000411943 390 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 COTL1P1-201ENST00000422309 375 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 RPL21P2-201ENST00000440049 481 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AC114801.2-201ENST00000503825 781 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 RNU6-307P-201ENST00000516743 106 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.3□□□□□ -1.88
SMARCA1P28370 MIR5696-201ENST00000578474 85 ntBASIC3.3□□□□□ -1.88
SMARCA1P28370 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.3□□□□□ -1.88
SMARCA1P28370 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SMARCA1P28370 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SMARCA1P28370 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SMARCA1P28370 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SMARCA1P28370 Y_RNA.496-201ENST00000384444 101 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 MIR512-1-201ENST00000384913 84 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 U3.26-201ENST00000391236 204 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AL139281.1-201ENST00000422120 335 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 EIF4EP2-201ENST00000422816 654 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.29□□□□□ -1.88
SMARCA1P28370 AL353997.1-201ENST00000432936 108 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 RPS29P6-201ENST00000438196 145 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.29□□□□□ -1.88
SMARCA1P28370 AL035666.1-201ENST00000446195 348 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.29□□□□□ -1.88
SMARCA1P28370 AC079354.2-201ENST00000453523 154 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 RNA5SP367-201ENST00000516557 118 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.29□□□□□ -1.88
SMARCA1P28370 AC040896.1-201ENST00000613819 479 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms