Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-1027P-201ENST00000383998 107 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 Y_RNA.424-201ENST00000384063 103 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 RNU6-217P-201ENST00000384164 104 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 Y_RNA.533-201ENST00000384596 114 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 SAR1AP2-201ENST00000392696 594 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
HOXD9P28356 MIR1252-201ENST00000408861 65 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 DPH3P2-201ENST00000422618 250 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD9P28356 AL353997.1-201ENST00000432936 108 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC108059.2-201ENST00000434626 151 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD9P28356 AC010655.3-201ENST00000478818 450 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD9P28356 HSBP1P1-201ENST00000555205 166 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC103996.1-201ENST00000555468 102 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.97□□□□□ -1.93
HOXD9P28356 MIR5188-201ENST00000583467 113 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.97□□□□□ -1.93
HOXD9P28356 AL158827.2-201ENST00000602494 330 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AC024153.1-201ENST00000603103 365 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 FTX_3.1-201ENST00000610451 147 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 SNORA50A-202ENST00000629536 136 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 AL691447.3-201ENST00000635020 330 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 U2.21-201ENST00000637295 81 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD9P28356 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXD9P28356 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXD9P28356 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXD9P28356 AP003122.5-201ENST00000527668 3766 ntBASIC2.97□□□□□ -1.93
HOXD9P28356 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
HOXD9P28356 MTND5P27-201ENST00000428871 1720 ntBASIC2.96□□□□□ -1.93
HOXD9P28356 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD9P28356 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
HOXD9P28356 FTLP6-201ENST00000355274 422 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 Y_RNA.106-201ENST00000363189 100 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 Y_RNA.152-201ENST00000363578 100 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 SNORD14.1-201ENST00000365609 90 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RNU6-72P-201ENST00000384285 79 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 Y_RNA.618-201ENST00000410949 107 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD9P28356 AC105272.1-201ENST00000438604 198 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD9P28356 MTATP6P7-201ENST00000453315 681 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RPS29P27-201ENST00000463711 170 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 MRPS35P2-201ENST00000508242 191 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXD9P28356 AC010265.1-201ENST00000513509 211 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RNU6-377P-201ENST00000515965 102 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RNA5SP367-201ENST00000516557 118 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 RNU6-635P-201ENST00000516651 102 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 GTF3AP2-201ENST00000557014 266 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.96□□□□□ -1.94
HOXD9P28356 AC110588.1-201ENST00000559699 137 ntBASIC2.96□□□□□ -1.94
HOXD9P28356 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD9P28356 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD9P28356 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXD9P28356 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXD9P28356 MTND5P9-201ENST00000503854 1755 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
HOXD9P28356 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXD9P28356 RNU6-428P-201ENST00000362942 107 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 SNORD50.1-201ENST00000362987 71 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 SNORA5B-201ENST00000363786 132 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RNU6-450P-201ENST00000364654 107 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RNU6-505P-201ENST00000384427 107 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 Y_RNA.556-201ENST00000384677 113 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 MIR521-1-201ENST00000384902 87 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 MIR625-201ENST00000385047 85 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RN7SKP58-201ENST00000411010 305 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AC073910.1-201ENST00000445047 438 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXD9P28356 AK3P2-201ENST00000507976 429 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RN7SKP132-201ENST00000516001 208 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RNU6-612P-201ENST00000516909 102 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 SNORA31.21-201ENST00000517180 77 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXD9P28356 AC144568.1-201ENST00000520139 137 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXD9P28356 AL355598.1-201ENST00000604169 202 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AC124312.5-201ENST00000604451 268 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AC099778.2-201ENST00000610904 211 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 SCARNA4-202ENST00000625402 129 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AL365361.1-201ENST00000566942 3481 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
HOXD9P28356 AC093908.1-201ENST00000623125 8092 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 AC010680.1-201ENST00000590024 3590 ntBASIC2.95□□□□□ -1.94
HOXD9P28356 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD9P28356 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXD9P28356 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXD9P28356 GABRG2-229ENST00000641017 3628 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 RNU6-778P-201ENST00000363269 103 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 RNU5E-7P-201ENST00000365290 117 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 Z98749.2-208ENST00000381646 500 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 RNU6-784P-201ENST00000384330 106 ntBASIC2.94□□□□□ -1.94
HOXD9P28356 AL714022.1-201ENST00000439897 151 ntBASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms