Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Y_RNA.20-201ENST00000362479 113 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 Y_RNA.26-201ENST00000362539 101 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RNY1P16-201ENST00000363063 111 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 Y_RNA.180-201ENST00000363867 113 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RNU4-42P-201ENST00000364738 142 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 SNORA23-201ENST00000365128 182 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RNU6-806P-201ENST00000365147 105 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 SNORA51.11-201ENST00000384442 131 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RNU6-790P-201ENST00000384479 105 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AC099677.1-201ENST00000420575 175 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RPS6P12-201ENST00000432491 726 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.24□□□□□ -1.89
COL3A1P02461 AC004383.1-201ENST00000438135 289 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.24□□□□□ -1.89
COL3A1P02461 RNU6-953P-201ENST00000459154 107 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 ACA59.1-201ENST00000515966 143 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 RNA5SP24-201ENST00000516478 95 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 SNORA81.3-201ENST00000517283 198 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AP006587.4-201ENST00000526053 529 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AP003733.2-201ENST00000529409 171 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.24□□□□□ -1.89
COL3A1P02461 ELOCP5-201ENST00000604924 333 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AC006329.2-201ENST00000611491 394 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AC004825.2-201ENST00000616634 455 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 AC130454.1-201ENST00000622948 401 ntBASIC3.24□□□□□ -1.89
COL3A1P02461 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL3A1P02461 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
COL3A1P02461 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.24□□□□□ -1.89
COL3A1P02461 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.24□□□□□ -1.89
COL3A1P02461 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
COL3A1P02461 RNU6-212P-201ENST00000362642 104 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RNU6-371P-201ENST00000364283 108 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 MIR548H3-201ENST00000408771 118 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RNU2-71P-201ENST00000411395 189 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 AL160275.3-201ENST00000423876 471 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RNU6-570P-201ENST00000517051 105 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RNU6-897P-201ENST00000517135 105 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 ERHP1-201ENST00000523006 310 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.23□□□□□ -1.89
COL3A1P02461 AC012433.1-201ENST00000588916 398 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 AL355877.2-201ENST00000603670 358 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RAC1P9-201ENST00000604990 392 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 RNU6-85P-201ENST00000605989 107 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 AC002044.1-201ENST00000606707 158 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.23□□□□□ -1.89
COL3A1P02461 MIR1291-201ENST00000627649 87 ntBASIC3.23□□□□□ -1.89
COL3A1P02461 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL3A1P02461 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
COL3A1P02461 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
COL3A1P02461 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL3A1P02461 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
COL3A1P02461 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.23□□□□□ -1.89
COL3A1P02461 Y_RNA.29-201ENST00000362570 113 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 Y_RNA.416-201ENST00000384014 113 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 SNORA36C-201ENST00000384289 132 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 MT-TC-201ENST00000387405 66 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RNA5SP508-201ENST00000411327 119 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RNU6-603P-201ENST00000411403 107 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AL133396.1-201ENST00000432048 687 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AL353997.1-201ENST00000432936 108 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC018634.1-201ENST00000437554 401 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC104332.1-201ENST00000440471 797 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 DAP3P1-201ENST00000441522 278 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 snoU13.23-201ENST00000458863 104 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RNU7-169P-201ENST00000459456 61 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RPL23AP45-201ENST00000476406 468 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.22□□□□□ -1.89
COL3A1P02461 AC098826.3-201ENST00000603823 466 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC009779.6-201ENST00000603972 165 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC067747.1-201ENST00000608026 250 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 FTX_2.1-201ENST00000618816 94 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 MIR6130-201ENST00000619419 109 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC064859.1-201ENST00000624741 174 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.22□□□□□ -1.89
COL3A1P02461 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.22□□□□□ -1.89
COL3A1P02461 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL3A1P02461 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
COL3A1P02461 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL3A1P02461 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.22□□□□□ -1.89
COL3A1P02461 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL3A1P02461 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
COL3A1P02461 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
COL3A1P02461 SNORA25.6-201ENST00000364121 118 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 Y_RNA.270-201ENST00000364693 104 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RNU6-746P-201ENST00000384112 109 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RNU6-611P-201ENST00000384276 104 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 Y_RNA.518-201ENST00000384552 113 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AL030996.1-201ENST00000411430 235 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 RPL21P90-201ENST00000415692 466 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL3A1P02461 RNU6-911P-201ENST00000516523 104 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 IGKV2D-36-201ENST00000518643 226 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC104576.1-201ENST00000524225 88 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC090517.1-201ENST00000569307 266 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.22□□□□□ -1.89
COL3A1P02461 OR1M4P-201ENST00000589199 287 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AL390123.1-201ENST00000603216 237 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.22□□□□□ -1.89
COL3A1P02461 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.22□□□□□ -1.89
COL3A1P02461 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms