Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 RNU4-91P-201ENST00000364778 135 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-25P-201ENST00000383873 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-1-201ENST00000383898 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-48P-201ENST00000384161 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-36P-201ENST00000384172 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-4P-201ENST00000384205 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-5P-201ENST00000384238 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-3P-201ENST00000384314 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-16P-201ENST00000384385 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-456P-201ENST00000384493 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-15P-201ENST00000384534 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-2-201ENST00000384627 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-29P-201ENST00000384637 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-9-201ENST00000384776 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-33P-201ENST00000384793 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 MIR544A-201ENST00000384855 91 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC1.19□□□□□ -2.22
CPSF4O95639 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC244636.1-201ENST00000421152 228 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CPSF4O95639 MTCO3P46-201ENST00000425787 232 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AL121890.1-201ENST00000435457 205 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AL031667.1-201ENST00000440222 725 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.19□□□□□ -2.22
CPSF4O95639 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 AC090821.2-201ENST00000523552 176 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AP000889.1-201ENST00000530968 660 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC022616.8-201ENST00000533569 253 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.19□□□□□ -2.22
CPSF4O95639 MIR3913-1-201ENST00000577744 102 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC091135.1-201ENST00000585943 307 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AL590229.1-201ENST00000603497 542 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 RNU6-6P-201ENST00000606623 107 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC006566.1-201ENST00000608943 513 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC063944.3-201ENST00000609969 533 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AL773524.1-201ENST00000614065 229 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 MIR7843-201ENST00000622274 79 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 AC120349.3-201ENST00000624377 529 ntBASIC1.19□□□□□ -2.22
CPSF4O95639 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
CPSF4O95639 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
CPSF4O95639 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
CPSF4O95639 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
CPSF4O95639 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CPSF4O95639 RNU6-181P-201ENST00000363225 107 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RNU6-105P-201ENST00000363909 104 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RNU6-743P-201ENST00000364151 106 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RNU4-48P-201ENST00000365559 182 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 MIR29B2-201ENST00000385055 81 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 MIR1283-2-201ENST00000408621 87 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 Y_RNA.597-201ENST00000410463 100 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC133104.1-201ENST00000429100 218 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.18□□□□□ -2.22
CPSF4O95639 RPS6P15-201ENST00000431996 751 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RPS15AP10-201ENST00000432472 382 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AL591806.2-201ENST00000433122 173 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC244505.5-201ENST00000443639 207 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.18□□□□□ -2.22
CPSF4O95639 FDX1P2-201ENST00000450769 375 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 HMGN2P23-201ENST00000456759 269 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC087884.1-201ENST00000469738 328 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC004223.1-201ENST00000479840 271 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RNU6-970P-201ENST00000516312 107 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 RNU6-445P-201ENST00000516949 107 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.18□□□□□ -2.22
CPSF4O95639 AC018630.3-201ENST00000542637 96 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.18□□□□□ -2.22
CPSF4O95639 AC008945.2-201ENST00000606056 604 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 AC104073.3-201ENST00000610942 955 ntBASIC1.18□□□□□ -2.22
CPSF4O95639 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.18□□□□□ -2.22
CPSF4O95639 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.17□□□□□ -2.22
CPSF4O95639 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
CPSF4O95639 RNU6-1222P-201ENST00000384615 107 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 RNU4-46P-201ENST00000410818 138 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 RNU2-41P-201ENST00000410991 178 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.17□□□□□ -2.22
CPSF4O95639 PIGFP2-201ENST00000421400 651 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.17□□□□□ -2.22
CPSF4O95639 AC015922.2-201ENST00000435593 184 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC243964.1-201ENST00000441814 261 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 KATNBL1P3-201ENST00000443475 909 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.17□□□□□ -2.22
CPSF4O95639 MTND1P18-201ENST00000448191 573 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 RPS27AP8-201ENST00000452665 445 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 RPS29P29-201ENST00000456396 171 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 MTND2P33-201ENST00000506452 1031 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 MTCO3P7-201ENST00000510008 774 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC009646.1-201ENST00000510455 318 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 PTP4A1P4-201ENST00000512479 322 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 RNU6-377P-201ENST00000515965 102 ntBASIC1.17□□□□□ -2.22
CPSF4O95639 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC1.17□□□□□ -2.22
CPSF4O95639 DUXAP5-201ENST00000529668 529 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 218.9 ms