Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 Z69908.1-201ENST00000622603 247 ntBASIC1.84□□□□□ -2.11
MSH4O15457 AC022418.1-201ENST00000624118 445 ntBASIC1.84□□□□□ -2.11
MSH4O15457 MIR3974-201ENST00000637126 96 ntBASIC1.84□□□□□ -2.11
MSH4O15457 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
MSH4O15457 ZNF680P1-201ENST00000436625 1469 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC006026.1-201ENST00000444025 1803 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-105P-201ENST00000363909 104 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-944P-201ENST00000364023 107 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-546P-201ENST00000383991 107 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-434P-201ENST00000384376 107 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-1127P-201ENST00000384580 107 ntBASIC1.83□□□□□ -2.12
MSH4O15457 MIR29B2-201ENST00000385055 81 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH4O15457 MTATP6P18-201ENST00000417994 673 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC090960.1-201ENST00000421072 306 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH4O15457 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH4O15457 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH4O15457 AL137159.1-201ENST00000452808 512 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AL122001.1-201ENST00000457027 370 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNA5SP233-201ENST00000459153 113 ntBASIC1.83□□□□□ -2.12
MSH4O15457 GMFBP1-201ENST00000467831 427 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RPL30P1-201ENST00000488676 339 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC010486.3-201ENST00000511602 785 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU6-377P-201ENST00000515965 102 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RNU2-69P-201ENST00000516061 100 ntBASIC1.83□□□□□ -2.12
MSH4O15457 RN7SKP256-201ENST00000517201 314 ntBASIC1.83□□□□□ -2.12
MSH4O15457 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH4O15457 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH4O15457 CYCSP27-201ENST00000527643 293 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC023050.3-201ENST00000541142 333 ntBASIC1.83□□□□□ -2.12
MSH4O15457 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH4O15457 SNRPGP17-201ENST00000603780 214 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AC004908.3-201ENST00000610248 625 ntBASIC1.83□□□□□ -2.12
MSH4O15457 AL162373.1-201ENST00000620433 407 ntBASIC1.83□□□□□ -2.12
MSH4O15457 ELL2P3-201ENST00000457883 1602 ntBASIC1.83□□□□□ -2.12
MSH4O15457 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
MSH4O15457 AC008555.8-201ENST00000623602 2168 ntBASIC1.82□□□□□ -2.12
MSH4O15457 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
MSH4O15457 MIR676-201ENST00000390702 67 ntBASIC1.82□□□□□ -2.12
MSH4O15457 SNORA16.2-201ENST00000390991 127 ntBASIC1.82□□□□□ -2.12
MSH4O15457 RNU6-1245P-201ENST00000411130 106 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.82□□□□□ -2.12
MSH4O15457 AL451074.3-201ENST00000437709 472 ntBASIC1.82□□□□□ -2.12
MSH4O15457 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.82□□□□□ -2.12
MSH4O15457 PPP1R2P5-201ENST00000457256 603 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH4O15457 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH4O15457 SCARNA18-201ENST00000459004 134 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC079382.1-201ENST00000493346 557 ntBASIC1.82□□□□□ -2.12
MSH4O15457 MTND2P33-201ENST00000506452 1031 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC117532.1-201ENST00000514638 323 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.82□□□□□ -2.12
MSH4O15457 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.82□□□□□ -2.12
MSH4O15457 AC008749.1-201ENST00000597650 306 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC119751.7-201ENST00000600494 245 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC010620.1-201ENST00000601088 1102 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AP000942.3-201ENST00000603702 160 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC123912.5-201ENST00000605470 343 ntBASIC1.82□□□□□ -2.12
MSH4O15457 AC136475.10-201ENST00000620253 385 ntBASIC1.82□□□□□ -2.12
MSH4O15457 SDR42E1P4-201ENST00000620894 481 ntBASIC1.82□□□□□ -2.12
MSH4O15457 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.82□□□□□ -2.12
MSH4O15457 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 RNU6-1120P-201ENST00000362988 108 ntBASIC1.81□□□□□ -2.12
MSH4O15457 RNU6-457P-201ENST00000363999 107 ntBASIC1.81□□□□□ -2.12
MSH4O15457 SNORA75-201ENST00000384158 137 ntBASIC1.81□□□□□ -2.12
MSH4O15457 RNU6-1222P-201ENST00000384615 107 ntBASIC1.81□□□□□ -2.12
MSH4O15457 SNORA40.19-201ENST00000390846 128 ntBASIC1.81□□□□□ -2.12
MSH4O15457 RNU2-29P-201ENST00000410423 189 ntBASIC1.81□□□□□ -2.12
MSH4O15457 RNU2-48P-201ENST00000410694 191 ntBASIC1.81□□□□□ -2.12
MSH4O15457 RN7SKP101-201ENST00000411376 320 ntBASIC1.81□□□□□ -2.12
MSH4O15457 AL030996.1-201ENST00000411430 235 ntBASIC1.81□□□□□ -2.12
MSH4O15457 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.81□□□□□ -2.12
MSH4O15457 USP9YP18-201ENST00000425912 695 ntBASIC1.81□□□□□ -2.12
MSH4O15457 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
MSH4O15457 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 RNU6-965P-201ENST00000516721 96 ntBASIC1.81□□□□□ -2.12
MSH4O15457 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 AC008752.3-201ENST00000588113 712 ntBASIC1.81□□□□□ -2.12
MSH4O15457 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH4O15457 AC063943.3-201ENST00000615562 356 ntBASIC1.81□□□□□ -2.12
MSH4O15457 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
MSH4O15457 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
MSH4O15457 SNORD115-3-201ENST00000363100 82 ntBASIC1.8□□□□□ -2.12
MSH4O15457 Y_RNA.159-201ENST00000363674 87 ntBASIC1.8□□□□□ -2.12
MSH4O15457 Y_RNA.480-201ENST00000384364 102 ntBASIC1.8□□□□□ -2.12
MSH4O15457 MIR518A2-201ENST00000384966 87 ntBASIC1.8□□□□□ -2.12
MSH4O15457 SNORD56-201ENST00000413522 71 ntBASIC1.8□□□□□ -2.12
MSH4O15457 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH4O15457 MTCO2P34-201ENST00000421994 607 ntBASIC1.8□□□□□ -2.12
MSH4O15457 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH4O15457 RPS15AP10-201ENST00000432472 382 ntBASIC1.8□□□□□ -2.12
MSH4O15457 AL356010.1-201ENST00000456364 102 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms