Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 SNORA8.3-201ENST00000384679 139 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 RPL23AP58-201ENST00000440453 469 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC006011.1-201ENST00000442758 349 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 RNU6-344P-201ENST00000516635 111 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AP002001.1-203ENST00000534002 267 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 RNU6-91P-201ENST00000607774 107 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC068724.3-201ENST00000625906 87 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 MIR3199-2-201ENST00000636243 86 ntBASIC4.35□□□□□ -1.71
USP3Q9Y6I4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP3Q9Y6I4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 RNA5SP130-201ENST00000364431 114 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 AL355497.1-201ENST00000406262 551 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 AL137159.1-201ENST00000452808 512 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 MIR3160-1-201ENST00000577972 85 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 SNORD11B-201ENST00000607707 90 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 MIR7702-201ENST00000621931 59 ntBASIC4.34□□□□□ -1.71
USP3Q9Y6I4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
USP3Q9Y6I4 AC004944.1-201ENST00000517807 3059 ntBASIC4.34□□□□□ -1.72
USP3Q9Y6I4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
USP3Q9Y6I4 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.34□□□□□ -1.72
USP3Q9Y6I4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
USP3Q9Y6I4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SCN1A-220ENST00000641603 12506 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 RNU6-727P-201ENST00000363592 107 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 Y_RNA.337-201ENST00000365312 102 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SNORD116-14-201ENST00000383894 92 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SNORD116-17-201ENST00000383929 92 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SNORD116-15-201ENST00000384445 92 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SNORD20-201ENST00000384550 80 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 SNORD116-19-201ENST00000384729 92 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 TOMM22P2-201ENST00000430735 237 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC134698.5-201ENST00000519444 336 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 TOMM20P2-201ENST00000540082 421 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC069294.1-201ENST00000608397 350 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC004825.2-201ENST00000616634 455 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 ZYXP1-201ENST00000617638 118 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC112484.5-201ENST00000624189 228 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 AC015813.6-201ENST00000624409 5808 ntBASIC4.33□□□□□ -1.72
USP3Q9Y6I4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP3Q9Y6I4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC010329.5-201ENST00000623497 2174 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 RNU6-834P-201ENST00000362367 110 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 SNORA37-201ENST00000384504 129 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 MIR626-201ENST00000385032 94 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 CBX3P9-201ENST00000402326 552 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AP000873.1-201ENST00000463987 400 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC107626.1-201ENST00000471084 183 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 RNU6-919P-201ENST00000516731 104 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 SNORD19.2-201ENST00000516978 73 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 IGKV2D-19-201ENST00000523346 262 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC021269.2-201ENST00000532318 330 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AP004242.1-201ENST00000533701 349 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 HIGD1AP1-201ENST00000550979 275 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC011471.1-201ENST00000585766 187 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AL034555.1-201ENST00000604816 211 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC073308.1-201ENST00000623696 305 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
USP3Q9Y6I4 CUL1P1-201ENST00000509510 2425 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 AC010300.1-201ENST00000600671 5134 ntBASIC4.32□□□□□ -1.72
USP3Q9Y6I4 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USP3Q9Y6I4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms