Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 SNRPGP18-201ENST00000553000 214 ntBASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 MIR5696-201ENST00000578474 85 ntBASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 AC024581.2-201ENST00000619986 252 ntBASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 AC241585.2-209ENST00000638217 143 ntBASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 AC010889.1-201ENST00000566193 2666 ntBASIC3.28□□□□□ -1.88
PCDHA1Q9Y5I3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-1115P-201ENST00000362490 106 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-490P-201ENST00000362985 107 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-784P-201ENST00000384330 106 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU2-49P-201ENST00000410666 184 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-1245P-201ENST00000411130 106 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 BX276092.3-201ENST00000424182 230 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 PTGES3P4-201ENST00000426243 356 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 MTND3P9-201ENST00000429526 346 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 AP001025.1-201ENST00000486139 332 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU5F-8P-201ENST00000515941 111 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 RNU5B-3P-201ENST00000516601 115 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 CKS1BP7-201ENST00000522230 235 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 MIR3171-201ENST00000584270 74 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.812-201ENST00000610788 101 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.784-201ENST00000613803 101 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.787-201ENST00000616522 101 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.780-201ENST00000617336 101 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.801-201ENST00000619005 101 ntBASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PCDHA1Q9Y5I3 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNU1-35P-201ENST00000362782 153 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 SNORD56.1-201ENST00000362913 68 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNU1-105P-201ENST00000363470 161 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.445-201ENST00000384168 102 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.463-201ENST00000384271 102 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.500-201ENST00000384466 111 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-748P-201ENST00000384648 107 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-19P-201ENST00000384718 107 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AL590004.1-201ENST00000405321 300 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 MIR1289-1-201ENST00000408836 144 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNA5SP390-201ENST00000410191 113 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RN7SKP58-201ENST00000411010 305 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC243428.1-201ENST00000421099 264 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC018865.2-201ENST00000423631 129 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC087499.2-201ENST00000432861 149 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC105272.1-201ENST00000438604 198 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC090096.1-201ENST00000489168 390 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 ELOCP31-201ENST00000540463 467 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AL391813.1-201ENST00000603098 260 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC019159.1-201ENST00000605094 187 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AC097372.5-201ENST00000623665 376 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 AL079305.1-201ENST00000623159 3008 ntBASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
PCDHA1Q9Y5I3 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 MTND4P27-201ENST00000450813 1354 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 MTND5P30-201ENST00000452896 1731 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.5-201ENST00000362334 102 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 SNORD50.1-201ENST00000362987 71 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-692P-201ENST00000384496 107 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 MIR512-1-201ENST00000384913 84 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 BTF3L4P2-201ENST00000392798 346 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 MIR2053-201ENST00000459295 91 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 RPS27P29-201ENST00000463110 252 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 UBE2DNL-203ENST00000474922 222 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AC068781.1-201ENST00000488231 618 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AC022447.4-201ENST00000504053 364 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 Y_RNA.711-201ENST00000516993 102 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-264P-201ENST00000517134 104 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AP003072.1-201ENST00000531740 145 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 SUB1P3-201ENST00000564581 315 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 AC010653.1-201ENST00000571108 881 ntBASIC3.25□□□□□ -1.89
PCDHA1Q9Y5I3 RNU6-91P-201ENST00000607774 107 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms