Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CD24P4-201ENST00000382840 243 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 RNU6-843P-201ENST00000384454 104 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 SNORA46-201ENST00000384762 135 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 EIF4EP2-201ENST00000422816 654 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC104332.2-201ENST00000429959 156 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC011816.1-201ENST00000441346 546 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC243964.1-201ENST00000441814 261 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3□□□□□ -1.93
VPS4AQ9UN37 UQCRHP3-201ENST00000451503 251 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC133134.1-201ENST00000466800 359 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AP001025.1-201ENST00000486139 332 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC114801.2-201ENST00000503825 781 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 SCARNA15.1-201ENST00000516384 125 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 SNORA31.23-201ENST00000517219 133 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AL121821.2-201ENST00000556081 394 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC109446.1-201ENST00000566172 220 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC009163.5-201ENST00000575421 637 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC020895.1-201ENST00000595362 272 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 AC091152.3-201ENST00000604227 325 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.812-201ENST00000610788 101 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.784-201ENST00000613803 101 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.787-201ENST00000616522 101 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.780-201ENST00000617336 101 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.801-201ENST00000619005 101 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 MIR3199-2-201ENST00000636243 86 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
VPS4AQ9UN37 ADAM3A-203ENST00000461344 2157 ntBASIC3□□□□□ -1.93
VPS4AQ9UN37 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 MIR449A-201ENST00000362113 91 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-227P-201ENST00000362865 103 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 SNORD50.1-201ENST00000362987 71 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNA5SP139-201ENST00000364340 117 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-487P-201ENST00000365430 104 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.463-201ENST00000384271 102 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-784P-201ENST00000384330 106 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-933P-201ENST00000384424 107 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-790P-201ENST00000384479 105 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 SNORD116-20-201ENST00000384529 92 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-331P-201ENST00000384724 107 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-750P-201ENST00000390946 107 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AC096649.2-201ENST00000416186 393 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 PMCHL1-202ENST00000423102 261 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AC022018.1-201ENST00000430685 241 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AL161651.1-201ENST00000440882 223 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AL031183.1-201ENST00000457667 207 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RN7SL863P-201ENST00000462370 296 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RN7SL499P-201ENST00000481141 276 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-470P-201ENST00000515954 104 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 ACA59.1-201ENST00000515966 143 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU6-976P-201ENST00000516086 111 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 SCARNA16.2-201ENST00000516520 172 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.711-201ENST00000516993 102 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 ACA59.2-201ENST00000517061 156 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 SNRPGP18-201ENST00000553000 214 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 MIR2682-201ENST00000580305 110 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 MIR3171-201ENST00000584270 74 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AP001836.1-201ENST00000604675 523 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 AC092608.2-201ENST00000624427 218 ntBASIC2.99□□□□□ -1.93
VPS4AQ9UN37 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.99□□□□□ -1.93
VPS4AQ9UN37 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.2-201ENST00000362330 96 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.132-201ENST00000363421 102 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 Y_RNA.252-201ENST00000364556 101 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 RNU6-622P-201ENST00000384272 103 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 BX276092.3-201ENST00000424182 230 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC079354.2-201ENST00000453523 154 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 MED28P2-201ENST00000475771 317 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 SMURF2P1-201ENST00000514992 481 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 RNU6-307P-201ENST00000516743 106 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 CKS1BP7-201ENST00000522230 235 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AP003072.1-201ENST00000531740 145 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC010186.2-204ENST00000537668 439 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 SUB1P3-201ENST00000564581 315 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 MTCO3P13-201ENST00000577757 781 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC241585.2-209ENST00000638217 143 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC008669.1-201ENST00000565823 2178 ntBASIC2.98□□□□□ -1.93
VPS4AQ9UN37 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.98□□□□□ -1.93
VPS4AQ9UN37 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms