Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RNU6-655P-201ENST00000362858 107 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RNU1-132P-201ENST00000364300 164 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 snoU2_19.4-201ENST00000364329 80 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 SNORA18.2-201ENST00000383865 132 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC004866.1-201ENST00000411748 78 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AL139281.1-201ENST00000422120 335 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RPL23AP58-201ENST00000440453 469 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 RNA5SP154-201ENST00000516193 111 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 AC010889.1-201ENST00000566193 2666 ntBASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
LIMD1Q9UGP4 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.71□□□□□ -1.65
LIMD1Q9UGP4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.71□□□□□ -1.65
LIMD1Q9UGP4 AF127577.6-201ENST00000623352 2191 ntBASIC4.71□□□□□ -1.65
LIMD1Q9UGP4 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.127-201ENST00000363386 109 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 SNORA62.3-201ENST00000365110 153 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 MIR3065-201ENST00000390137 79 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 SDHCP2-201ENST00000398565 501 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 RNA5SP239-201ENST00000410218 129 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 RN7SL542P-201ENST00000467147 294 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 RPS29P2-201ENST00000479278 136 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 SNORA25.12-201ENST00000516202 82 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 AL133412.1-201ENST00000380194 2992 ntBASIC4.71□□□□□ -1.66
LIMD1Q9UGP4 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 MIR372-201ENST00000362225 67 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 MIR383-201ENST00000362257 73 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 RNU6-1205P-201ENST00000363625 106 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 RNU6-818P-201ENST00000364837 108 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.361-201ENST00000365515 120 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 RNA5SP283-201ENST00000365604 119 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 RNU6-144P-201ENST00000383951 107 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 AL592291.1-201ENST00000403830 352 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 HSPE1P26-201ENST00000405341 275 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 RNA5SP504-201ENST00000410676 117 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 CKS1BP6-201ENST00000424932 240 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 MTND4LP9-201ENST00000427694 174 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 DEFB131C-201ENST00000528817 165 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 MIR4444-1-201ENST00000581696 74 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 MIR4444-2-201ENST00000584390 74 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 AC069528.2-201ENST00000624849 1991 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 SCN1A-220ENST00000641603 12506 ntBASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.7□□□□□ -1.66
LIMD1Q9UGP4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.353-201ENST00000365440 108 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 AP002088.1-201ENST00000382740 395 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 RNU6-198P-201ENST00000384258 104 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 MIR554-201ENST00000384874 96 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 RNA5SP272-201ENST00000516095 111 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 RNU6-1007P-201ENST00000516586 107 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 TUG1_4.1-201ENST00000619464 181 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 AC112484.5-201ENST00000624189 228 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 U6.115-201ENST00000636045 103 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 UBE3AP2-201ENST00000429033 2259 ntBASIC4.69□□□□□ -1.66
LIMD1Q9UGP4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.24-201ENST00000362508 103 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 Y_RNA.310-201ENST00000365063 113 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 SNORD116-14-201ENST00000383894 92 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 SNORD116-17-201ENST00000383929 92 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 SNORD116-15-201ENST00000384445 92 ntBASIC4.68□□□□□ -1.66
LIMD1Q9UGP4 RNU1-57P-201ENST00000384491 166 ntBASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms